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WormBase Tree Display for Gene: WBGene00003607

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Name Class

WBGene00003607EvidencePaper_evidenceWBPaper00003416
WBPaper00004181
SMapS_parentSequenceF33D4
IdentityVersion1
NameCGC_namenhr-8Person_evidenceWBPerson600
Sequence_nameF33D4.1
Molecular_nameF33D4.1a
F33D4.1a.1
CE33927
F33D4.1b
CE33928
F33D4.1b.1
Other_nameCELE_F33D4.1Accession_evidenceNDBBX284604
Public_namenhr-8
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
Allele (42)
Legacy_informationNMK. Nuclear hormone receptor superfamily. [AE]
[C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y50A3 etc. [AE]
StrainWBStrain00000059
WBStrain00051691
WBStrain00054632
RNASeq_FPKM (74)
GO_annotation (17)
OrthologWBGene00062478Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00028300Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00075860Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00135502Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
WBGene00190079Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WBGene00122418Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00106664Pristionchus pacificusFrom_analysisOMA
CSP26.g16155Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP40.g1401Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-nhr-8Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g7973Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00007.g523Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_014002Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g1318Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40306800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g10895Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00301869Trichuris murisFrom_analysisWormBase-Compara
WBGene00301928Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0015240Drosophila melanogasterFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-000210-31Danio rerioFrom_analysisInparanoid
Panther
SonicParanoid
ZFIN:ZDB-GENE-080403-10Danio rerioFrom_analysisInparanoid
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030903-3Danio rerioFrom_analysisInparanoid
Panther
SonicParanoid
HGNC:12679Homo sapiensFrom_analysisInparanoid
OrthoInspector
Panther
MGI:1346307Mus musculusFrom_analysisInparanoid
Panther
SonicParanoid
MGI:1337040Mus musculusFrom_analysisInparanoid
Panther
SonicParanoid
MGI:1352464Mus musculusFrom_analysisInparanoid
Panther
SonicParanoid
MGI:1352462Mus musculusFrom_analysisInparanoid
Panther
SonicParanoid
MGI:1352463Mus musculusFrom_analysisInparanoid
Panther
SonicParanoid
MGI:103076Mus musculusFrom_analysisInparanoid
OrthoInspector
Panther
SonicParanoid
RGD:3959Rattus norvegicusFrom_analysisInparanoid
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Paralog (19)
Structured_descriptionConcise_descriptionThe nhr-8 gene encodes a nuclear hormone receptor homolog; nhr-8(ok186) mutants have abnormally low resistance to the toxins colchicine and chloroquine.Paper_evidenceWBPaper00004723
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in cholesterol homeostasis. Located in nucleus. Expressed in intestinal cell. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); autosomal recessive limb-girdle muscular dystrophy type 2B; carcinoma (multiple); and lung disease (multiple). Is an ortholog of human VDR (vitamin D receptor).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (53)
Molecular_infoCorresponding_CDSF33D4.1a
F33D4.1b
Corresponding_CDS_historyF33D4.1a:wp99
F33D4.1b:wp99
Corresponding_transcriptF33D4.1a.1
F33D4.1b.1
Other_sequenceOden_contig20559
Oden_isotig10723
DN558166.1
AYC01323_1
HBC03177_1
LSC01052_1
AE02063
ES414143.1
Associated_featureWBsf646108
WBsf646109
WBsf660331
WBsf660332
WBsf978331
WBsf228565
WBsf228566
Transcription_factorWBTranscriptionFactor000264
Experimental_infoRNAi_result (16)
Expr_patternExpr1351
Expr11216
Expr1023140
Expr1031655
Expr1150089
Expr2014241
Expr2032482
Drives_constructWBCnstr00010232
WBCnstr00036006
Construct_productWBCnstr00010232
WBCnstr00018225
WBCnstr00036006
Regulate_expr_clusterWBPaper00044030:nhr-8(hd117)_downregulated
WBPaper00044030:nhr-8(hd117)_upregulated
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062446:nhr-8(ok186)_downregulated
WBPaper00062446:nhr-8(ok186)_upregulated
Microarray_results (29)
Expression_cluster (165)
Interaction (68)
WBProcessWBbiopr:00000001
WBbiopr:00000121
Map_infoMapIVPosition3.41773Error0.007272
PositivePositive_cloneF33D4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Y50A3Person_evidenceWBPerson600
Y53H2Person_evidenceWBPerson600
Y54E12Person_evidenceWBPerson600
Mapping_dataMulti_point4520
Pseudo_map_position
Reference (53)
Remarkcm14e12 unnecessary in sequence list. sdm 11/00
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene