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WormBase Tree Display for Gene: WBGene00003573

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Name Class

WBGene00003573EvidenceAuthor_evidenceSchwartz EM
SMapS_parentSequenceC13D9
IdentityVersion1
NameCGC_namencx-8
Sequence_nameC13D9.7
Molecular_nameC13D9.7
C13D9.7.1
CE08140
Other_nameCELE_C13D9.7Accession_evidenceNDBBX284605
Public_namencx-8
DB_infoDatabaseAceViewgene5F462
WormQTLgeneWBGene00003573
WormFluxgeneWBGene00003573
NDBlocus_tagCELE_C13D9.7
PanthergeneCAEEL|WormBase=WBGene00003573|UniProtKB=O16241
familyPTHR12266
NCBIgene182575
RefSeqproteinNM_071940.7
TREEFAMTREEFAM_IDTF323444
TrEMBLUniProtAccO16241
UniProt_GCRPUniProtAccO16241
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classncx
Allele (190)
RNASeq_FPKM (74)
GO_annotation (11)
OrthologWBGene00030386Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00030393Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00030394Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00111077Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00093324Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
CSP21.g4266Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g4267Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g4268Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g19993Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g4067Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14894Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g5111Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g1976Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15031Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g5538Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g18416Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g18965Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g24620Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g24621Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g14281Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g850Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00294.g8664Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_05489.g19627Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13256.g24154Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_V.g18693Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00032.g1768Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_01288.g19885Caenorhabditis sinicaFrom_analysisWormBase-Compara
Pan_g20344Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50183600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g14136Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00121776Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00211606Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00215686Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00097681Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00203550Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00272574Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00257709Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000002365Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
Panther
FB:FBgn0033323Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0033324Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0033326Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0033599Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
FB:FBgn0034156Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-130530-900Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:26175Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2180781Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1565818Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00003571Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003572Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003574Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003575Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
Structured_description (2)
Molecular_infoCorresponding_CDSC13D9.7
Corresponding_transcriptC13D9.7.1
Other_sequenceCR11255
Associated_featureWBsf233628
WBsf233629
Experimental_infoRNAi_resultWBRNAi00023936Inferred_automaticallyRNAi_primary
WBRNAi00010691Inferred_automaticallyRNAi_primary
WBRNAi00112438Inferred_automaticallyRNAi_primary
WBRNAi00023136Inferred_automaticallyRNAi_primary
WBRNAi00040442Inferred_automaticallyRNAi_primary
WBRNAi00023648Inferred_automaticallyRNAi_primary
WBRNAi00023043Inferred_automaticallyRNAi_primary
WBRNAi00112439Inferred_automaticallyRNAi_primary
Expr_patternExpr11162
Expr1025533
Expr1144509
Expr2013925
Expr2032164
Drives_constructWBCnstr00018022
WBCnstr00036032
Construct_productWBCnstr00036032
Microarray_results (19)
Expression_cluster (125)
Interaction (32)
Map_infoMapVPosition-3.61451Error0.002001
PositivePositive_cloneC13D9Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene