WormBase Tree Display for Gene: WBGene00003573

WBGene00003573 Evidence: Author_evidence: Schwartz EM
  SMap: S_parent: Sequence: C13D9
  Identity: Version: 1
    Name: CGC_name: ncx-8
      Sequence_name: C13D9.7
      Molecular_name (3)
      Other_name: CELE_C13D9.7 Accession_evidence: NDB BX284605
      Public_name: ncx-8
    DB_info: Database: AceView gene 5F462
        WormQTL gene WBGene00003573
        WormFlux gene WBGene00003573
        NDB locus_tag CELE_C13D9.7
        Panther gene CAEEL|WormBase=WBGene00003573|UniProtKB=O16241
          family PTHR12266
        NCBI gene 182575
        RefSeq protein NM_071940.7
        TREEFAM TREEFAM_ID TF323444
        TrEMBL UniProtAcc O16241
        UniProt_GCRP UniProtAcc O16241
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ncx
    Allele (190)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog: WBGene00030386 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00030393 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00030394 Caenorhabditis briggsae From_analysis: OrthoMCL
            WormBase-Compara
      WBGene00111077 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00093324 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      CSP21.g4266 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g4267 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g4268 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g19993 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g4067 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14894 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g5111 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g1976 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15031 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g5538 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18416 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g18965 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g24620 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g24621 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g14281 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g850 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00294.g8664 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_05489.g19627 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_13256.g24154 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g18693 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_00032.g1768 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_01288.g19885 Caenorhabditis sinica From_analysis: WormBase-Compara
      Pan_g20344 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50183600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g14136 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00121776 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00211606 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00215686 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00097681 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00203550 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00272574 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00257709 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000002365 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            Panther
      FB:FBgn0033323 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0033324 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0033326 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0033599 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0034156 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-130530-900 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      HGNC:26175 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2180781 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1565818 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00003571 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003572 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003574 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003575 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Concise_description: ncx-8 encodes a putative Na[+]/Ca[2+] exchanger of uncertainstoichiometry and affinity, orthologous to human SLC24A6 and paralogousto NCX-6/-7 and NCX-9/-10; NCX-8 may function intracellularly; NCX-8 has tandem Calx-alpha domains predicted to carry out ion transport; NCX-8 is required for normally high levels of body fat. Paper_evidence: WBPaper00012774
            WBPaper00028596
            WBPaper00031156
            WBPaper00031157
            WBPaper00031158
            WBPaper00031159
            WBPaper00031160
          Curator_confirmed: WBPerson567
          Date_last_updated: 07 Nov 2007 00:00:00
      Automated_description: Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in intracellular calcium ion homeostasis and monoatomic cation transport. Predicted to be located in membrane. Expressed in intestine and pharynx. Is an ortholog of human SLC8B1 (solute carrier family 8 member B1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C13D9.7
    Corresponding_transcript: C13D9.7.1
    Other_sequence: CR11255
    Associated_feature: WBsf233628
      WBsf233629
  Experimental_info: RNAi_result: WBRNAi00023936 Inferred_automatically: RNAi_primary
      WBRNAi00010691 Inferred_automatically: RNAi_primary
      WBRNAi00112438 Inferred_automatically: RNAi_primary
      WBRNAi00023136 Inferred_automatically: RNAi_primary
      WBRNAi00040442 Inferred_automatically: RNAi_primary
      WBRNAi00023648 Inferred_automatically: RNAi_primary
      WBRNAi00023043 Inferred_automatically: RNAi_primary
      WBRNAi00112439 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr11162
      Expr1025533
      Expr1144509
      Expr2013925
      Expr2032164
    Drives_construct: WBCnstr00018022
      WBCnstr00036032
    Construct_product: WBCnstr00036032
    Microarray_results (19)
    Expression_cluster (125)
    Interaction (32)
  Map_info: Map: V Position: -3.61451 Error: 0.002001
    Positive: Positive_clone: C13D9 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene