WormBase Tree Display for Gene: WBGene00003573

WBGene00003573 Evidence: Author_evidence: Schwartz EM
  SMap: S_parent: Sequence: C13D9
  Identity: Version: 1
    Name: CGC_name: ncx-8
      Sequence_name: C13D9.7
      Molecular_name: C13D9.7
        C13D9.7.1
        CE08140
      Other_name: CELE_C13D9.7 Accession_evidence: NDB BX284605
      Public_name: ncx-8
    DB_info: Database: AceView gene 5F462
        WormQTL gene WBGene00003573
        WormFlux gene WBGene00003573
        NDB locus_tag CELE_C13D9.7
        Panther gene CAEEL|WormBase=WBGene00003573|UniProtKB=O16241
          family PTHR12266
        NCBI gene 182575
        RefSeq protein NM_071940.7
        TREEFAM TREEFAM_ID TF323444
        TrEMBL UniProtAcc O16241
        UniProt_GCRP UniProtAcc O16241
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ncx
    Allele: WBVar00017561
      WBVar01499528
      WBVar01973191
      WBVar01841280
      WBVar01841281
      WBVar01841282
      WBVar02136305
      WBVar01841283
      WBVar01841284
      WBVar01841285
      WBVar01841286
      WBVar01841287
      WBVar01841288
      WBVar01841289
      WBVar01841290
      WBVar01841291
      WBVar01841292
      WBVar01841293
      WBVar01841294
      WBVar01841295
      WBVar01841296
      WBVar01499740
      WBVar01841297
      WBVar01841298
      WBVar01841299
      WBVar01841300
      WBVar01841301
      WBVar01841302
      WBVar01841303
      WBVar01841304
      WBVar01841305
      WBVar01841306
      WBVar01841307
      WBVar01841308
      WBVar01841309
      WBVar01841310
      WBVar00308211
      WBVar01841311
      WBVar01841312
      WBVar01841313
      WBVar01841314
      WBVar01841315
      WBVar01841316
      WBVar01841317
      WBVar02150931
      WBVar01500129
      WBVar01841318
      WBVar01841319
      WBVar01841320
      WBVar02150360
      WBVar02113853
      WBVar01841321
      WBVar02113854
      WBVar01841322
      WBVar02113855
      WBVar01841323
      WBVar02113856
      WBVar01841324
      WBVar01841325
      WBVar02113857
      WBVar01841326
      WBVar02113858
      WBVar02113859
      WBVar01841327
      WBVar01841328
      WBVar02113860
      WBVar01841329
      WBVar02113861
      WBVar01841330
      WBVar02113862
      WBVar02113863
      WBVar01841331
      WBVar02113864
      WBVar01841332
      WBVar02113865
      WBVar01841333
      WBVar02113866
      WBVar01841334
      WBVar02113867
      WBVar01841335
      WBVar01841336
      WBVar01841337
      WBVar01841338
      WBVar01841339
      WBVar01861992
      WBVar01841340
      WBVar01861993
      WBVar01841341
      WBVar01861994
      WBVar01841342
      WBVar01861995
      WBVar01841343
      WBVar01841344
      WBVar01841345
      WBVar01651181
      WBVar01841346
      WBVar01841347
      WBVar00457454
      WBVar00457455
      WBVar01841348
      WBVar00457456
      WBVar01841349
      WBVar01841350
      WBVar00457457
      WBVar00457458
      WBVar01841351
      WBVar01841352
      WBVar00457459
      WBVar01841353
      WBVar00457460
      WBVar02150968
      WBVar01841354
      WBVar00457461
      WBVar00457462
      WBVar01841355
      WBVar00457463
      WBVar01841356
      WBVar00457464
      WBVar01841357
      WBVar01841358
      WBVar00457465
      WBVar01841359
      WBVar00457466
      WBVar01841360
      WBVar01841361
      WBVar01841362
      WBVar01841363
      WBVar01841364
      WBVar01841365
      WBVar01841366
      WBVar01570600
      WBVar01841367
      WBVar01841368
      WBVar01841369
      WBVar01841370
      WBVar01841371
      WBVar02054613
      WBVar01841372
      WBVar02054614
      WBVar01841373
      WBVar01841374
      WBVar01841375
      WBVar01841376
      WBVar01841377
      WBVar01483995
      WBVar01841378
      WBVar01841379
      WBVar01841380
      WBVar01841381
      WBVar01841382
      WBVar01841383
      WBVar01841384
      WBVar01841385
      WBVar01841386
      WBVar01841387
      WBVar01841388
      WBVar02124046
      WBVar01009180
      WBVar01009181
      WBVar01009182
      WBVar00208535
      WBVar00208536
      WBVar01009183
      WBVar01009184
      WBVar00208537
      WBVar01009185
      WBVar00208538
      WBVar01009186
      WBVar00208539
      WBVar01009187
      WBVar00208540
      WBVar01009188
      WBVar00208541
      WBVar00208542
      WBVar01009189
      WBVar00208543
      WBVar01009190
      WBVar01009191
      WBVar01009192
      WBVar01499496
      WBVar01009193
      WBVar01009194
      WBVar01009195
      WBVar01499316
      WBVar01009196
      WBVar01009197
      WBVar01009198
      WBVar01009199
      WBVar01009200
      WBVar01500066
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog (47)
    Paralog: WBGene00003571 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003572 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003574 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003575 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Concise_description: ncx-8 encodes a putative Na[+]/Ca[2+] exchanger of uncertainstoichiometry and affinity, orthologous to human SLC24A6 and paralogousto NCX-6/-7 and NCX-9/-10; NCX-8 may function intracellularly; NCX-8 has tandem Calx-alpha domains predicted to carry out ion transport; NCX-8 is required for normally high levels of body fat. Paper_evidence: WBPaper00012774
            WBPaper00028596
            WBPaper00031156
            WBPaper00031157
            WBPaper00031158
            WBPaper00031159
            WBPaper00031160
          Curator_confirmed: WBPerson567
          Date_last_updated: 07 Nov 2007 00:00:00
      Automated_description: Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in intracellular calcium ion homeostasis and monoatomic cation transport. Predicted to be located in membrane. Expressed in intestine and pharynx. Is an ortholog of human SLC8B1 (solute carrier family 8 member B1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C13D9.7
    Corresponding_transcript: C13D9.7.1
    Other_sequence: CR11255
    Associated_feature: WBsf233628
      WBsf233629
  Experimental_info: RNAi_result: WBRNAi00023936 Inferred_automatically: RNAi_primary
      WBRNAi00010691 Inferred_automatically: RNAi_primary
      WBRNAi00112438 Inferred_automatically: RNAi_primary
      WBRNAi00023136 Inferred_automatically: RNAi_primary
      WBRNAi00040442 Inferred_automatically: RNAi_primary
      WBRNAi00023648 Inferred_automatically: RNAi_primary
      WBRNAi00023043 Inferred_automatically: RNAi_primary
      WBRNAi00112439 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr11162
      Expr1025533
      Expr1144509
      Expr2013925
      Expr2032164
    Drives_construct: WBCnstr00018022
      WBCnstr00036032
    Construct_product: WBCnstr00036032
    Microarray_results (19)
    Expression_cluster (125)
    Interaction (32)
  Map_info: Map: V Position: -3.61451 Error: 0.002001
    Positive: Positive_clone: C13D9 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene