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WormBase Tree Display for Gene: WBGene00003565

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Name Class

WBGene00003565SMapS_parentSequenceCHROMOSOME_X
IdentityVersion1
NameCGC_namencs-3
Sequence_nameK03E6.3
Molecular_nameK03E6.3
K03E6.3.1
CE30288
Other_nameCELE_K03E6.3Accession_evidenceNDBBX284606
Public_namencs-3
DB_infoDatabaseAceViewgeneXB675
WormQTLgeneWBGene00003565
WormFluxgeneWBGene00003565
NDBlocus_tagCELE_K03E6.3
PanthergeneCAEEL|WormBase=WBGene00003565|UniProtKB=Q95ZR9
familyPTHR23055
NCBIgene186953
RefSeqproteinNM_075800.6
TrEMBLUniProtAccQ95ZR9
UniProt_GCRPUniProtAccQ95ZR9
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classncs
Allele (43)
RNASeq_FPKM (74)
GO_annotation00090197
00111142
Ortholog (26)
ParalogWBGene00003563Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00003564Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008998Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015867Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021116Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008307Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007710Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionncs-3 encodes a neuronal calcium sensor (NCS) protein with no obvious null phenotype.Paper_evidenceWBPaper00004225
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable calcium ion binding activity.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK03E6.3
Corresponding_transcriptK03E6.3.1
Other_sequence (11)
Associated_featureWBsf718499
WBsf1003929
WBsf1003930
WBsf1022204
WBsf1022205
WBsf235305
WBsf235306
Experimental_infoRNAi_resultWBRNAi00049835Inferred_automaticallyRNAi_primary
WBRNAi00016546Inferred_automaticallyRNAi_primary
WBRNAi00033918Inferred_automaticallyRNAi_primary
Expr_patternExpr1027181
Expr1153548
Expr2013912
Expr2032152
Drives_constructWBCnstr00036039
Construct_productWBCnstr00036039
Microarray_results (19)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:bodywall-muscle_CoreEnriched
WBPaper00037950:bodywall-muscle_embryo_enriched
WBPaper00037950:bodywall-muscle_embryo_SelectivelyEnriched
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045417:128Q-huntingtin_upreglated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00048988:neuron_expressed
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050344:ASER-neuron_enriched
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051021:4-bromodiphenyl-ether_upregulated
WBPaper00051257:Levamisole_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056443:DietaryRestriction_downregulated
WBPaper00056826:hmc_biased
WBPaper00057143:ztf-11(RNAi)_upregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00059471:EGL-43_interacting
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060661:sensory-neuron_enriched
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061203:let-418(n3536)_downregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061340:DA_DB
WBPaper00061340:DVC
WBPaper00061340:mu_int_mu_anal
WBPaper00061340:mu_sph
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061527:R07G3.8_9125-ric-4_17408
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062103:neuron_enriched
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062345:bortezomib_4h_downregulated_N2
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065841:7_0
WBPaper00065841:7_3
WBPaper00065841:7_4
WBPaper00065841:22_0
WBPaper00065841:38_0
WBPaper00065841:137_0
WBPaper00066062:xrep-4(lax137)_upregulated
cgc4489_group_22
WBPaper00031003:0hr_muscle_enriched
WBPaper00031003:24hr_muscle_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00034739:N2moreDR1350
WBPaper00036286:Pattern_I
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040876:mir-35_downregulated
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00044091:Bpseudomallei_induced_8h
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
Interaction (14)
Map_infoMapXPosition-18.7803
PositivePositive_cloneK03E6Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00004225
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene