WormBase Tree Display for Gene: WBGene00003544
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WBGene00003544 | Evidence | Author_evidence | Moehrlen F | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F46C5 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | nas-25 | Person_evidence | WBPerson1103 | |||||
Sequence_name | F46C5.3 | ||||||||
Molecular_name | F46C5.3 | ||||||||
F46C5.3.1 | |||||||||
CE28935 | |||||||||
Other_name | CELE_F46C5.3 | Accession_evidence | NDB | BX284602 | |||||
Public_name | nas-25 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nas | ||||||||
Allele (37) | |||||||||
Strain | WBStrain00002601 | ||||||||
WBStrain00037798 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (13) | |||||||||
Ortholog (33) | |||||||||
Paralog (48) | |||||||||
Structured_description | Concise_description | nas-25 encodes an astacin-like metalloprotease; large-scale expression studies reveal that a nas-25::GFP promoter fusion is expressed in the pharynx and pharyngeal-intestinal valve. | Paper_evidence | WBPaper00006254 | |||||
WBPaper00006525 | |||||||||
WBPaper00031006 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 15 Feb 2008 00:00:00 | ||||||||
Automated_description | Predicted to enable metalloendopeptidase activity. Predicted to be involved in molting cycle and proteolysis. Predicted to be located in extracellular region. Expressed in arcade cell; marginal cell; and rectal gland cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F46C5.3 | |||||||
Corresponding_CDS_history | F46C5.3:wp61 | ||||||||
Corresponding_transcript | F46C5.3.1 | ||||||||
Other_sequence | SRC00539_1 | ||||||||
SSC00042_1 | |||||||||
SS01464 | |||||||||
Hbac_isotig02723 | |||||||||
FC815339.1 | |||||||||
SS00066 | |||||||||
FC809974.1 | |||||||||
Associated_feature | WBsf988831 | ||||||||
WBsf1012752 | |||||||||
WBsf221821 | |||||||||
Experimental_info | RNAi_result | WBRNAi00089083 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00047507 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00032355 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00015076 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram1247 | ||||||||
Expr6086 | |||||||||
Expr8922 | |||||||||
Expr1013949 | |||||||||
Expr1151347 | |||||||||
Expr2013874 | |||||||||
Expr2032114 | |||||||||
Drives_construct | WBCnstr00003159 | ||||||||
WBCnstr00013617 | |||||||||
WBCnstr00036055 | |||||||||
Construct_product | WBCnstr00013617 | ||||||||
WBCnstr00036055 | |||||||||
Microarray_results (24) | |||||||||
Expression_cluster (105) | |||||||||
Interaction | WBInteraction000380472 | ||||||||
WBInteraction000397758 | |||||||||
WBInteraction000419814 | |||||||||
Map_info | Map | II | Position | 0.903735 | Error | 0.000817 | |||
Positive | Positive_clone | F46C5 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00006254 | ||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |