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WormBase Tree Display for Gene: WBGene00003517

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Name Class

WBGene00003517EvidencePaper_evidenceWBPaper00005726
SMapS_parentSequenceF31F6
IdentityVersion1
NameCGC_namenac-1
Sequence_nameF31F6.6
Molecular_nameF31F6.6
F31F6.6.1
CE34007
Other_nameindy-1Accession_evidenceEMBLAY090484
nad-1
cenadc1
CELE_F31F6.6Accession_evidenceNDBBX284606
Public_namenac-1
DB_infoDatabaseAceViewgeneXP515
WormQTLgeneWBGene00003517
WormFluxgeneWBGene00003517
NDBlocus_tagCELE_F31F6.6
PanthergeneCAEEL|WormBase=WBGene00003517|UniProtKB=Q93655
familyPTHR10283
NCBIgene181585
RefSeqproteinNM_078072.6
SwissProtUniProtAccQ93655
UniProt_GCRPUniProtAccQ93655
OMIMgene608305
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnac
Allele (60)
StrainWBStrain00031456
RNASeq_FPKM (74)
GO_annotation (19)
OrthologWBGene00058571Caenorhabditis remaneiFrom_analysis (4)
WBGene00029597Caenorhabditis briggsaeFrom_analysis (5)
WBGene00160517Caenorhabditis brenneriFrom_analysis (4)
WBGene00138285Caenorhabditis japonicaFrom_analysis (3)
WBGene00192537Caenorhabditis brenneriFrom_analysis (2)
WBGene00105534Pristionchus pacificusFrom_analysis (2)
WBGene00223997Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2471Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7814Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g19693Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13331Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g23173Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25121Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP38.g19514Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9961Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g8777Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00003.g277Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nac-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10023Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00203.g6953Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01713Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_025622Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00396Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_X0140400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20667Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241331Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00241335Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00292597Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000633Saccharomyces cerevisiaeFrom_analysis (4)
SGD:S000003734Saccharomyces cerevisiaeFrom_analysis (4)
SGD:S000005296Saccharomyces cerevisiaeFrom_analysis (4)
FB:FBgn0036816Drosophila melanogasterFrom_analysis (6)
FB:FBgn0064119Drosophila melanogasterFrom_analysis (8)
FB:FBgn0260466Drosophila melanogasterFrom_analysis (7)
ZFIN:ZDB-GENE-031222-3Danio rerioFrom_analysis (6)
ZFIN:ZDB-GENE-040426-2486Danio rerioFrom_analysis (6)
ZFIN:ZDB-GENE-040426-2389Danio rerioFrom_analysis (7)
ZFIN:ZDB-GENE-030131-4628Danio rerioFrom_analysis (7)
ZFIN:ZDB-GENE-130530-605Danio rerioFrom_analysis (7)
ZFIN:ZDB-GENE-070424-71Danio rerioFrom_analysis (6)
HGNC:10916Homo sapiensFrom_analysis (5)
HGNC:10917Homo sapiensFrom_analysis (7)
HGNC:15827Homo sapiensFrom_analysis (4)
HGNC:14430Homo sapiensFrom_analysis (5)
HGNC:23089Homo sapiensFrom_analysis (7)
MGI:1276558Mus musculusFrom_analysis (7)
MGI:1859937Mus musculusFrom_analysis (6)
MGI:2149635Mus musculusFrom_analysis (6)
MGI:3037150Mus musculusFrom_analysis (7)
MGI:2442367Mus musculusFrom_analysis (6)
RGD:61919Rattus norvegicusFrom_analysis (6)
RGD:628786Rattus norvegicusFrom_analysis (6)
RGD:61920Rattus norvegicusFrom_analysis (7)
RGD:631374Rattus norvegicusFrom_analysis (7)
RGD:1359715Rattus norvegicusFrom_analysis (5)
ParalogWBGene00003519Caenorhabditis elegansFrom_analysis (4)
WBGene00007138Caenorhabditis elegansFrom_analysis (3)
WBGene00003518Caenorhabditis elegansFrom_analysis (2)
Structured_descriptionConcise_descriptionnac-1 encodes a low-affinity sodium-coupled dicarboxylate transporter homologous to INDY in D. melanogaster and to mammalian NaDC1 and NaDC3; nac-1 is expressed in the intestine, in larvae and adults.Paper_evidenceWBPaper00005654
WBPaper00005726
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated10 Feb 2015 00:00:00
Automated_descriptionEnables low-affinity sodium:dicarboxylate symporter activity and succinate transmembrane transporter activity. Involved in succinate transport. Predicted to be located in membrane. Expressed in alimentary system. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 25. Is an ortholog of human SLC13A2 (solute carrier family 13 member 2) and SLC13A5 (solute carrier family 13 member 5).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0080453Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:23089)
Molecular_infoCorresponding_CDSF31F6.6
Corresponding_CDS_historyF31F6.6:wp101
Corresponding_transcriptF31F6.6.1
Other_sequenceAY090484
Hbac_isotig07691
ACC03517_1
Dviv_isotig26777
Oden_isotig19715
JI169837.1
Associated_featureWBsf663605
WBsf236736
WBsf236737
WBsf236738
Experimental_infoRNAi_resultWBRNAi00031637Inferred_automaticallyRNAi_primary
WBRNAi00022870Inferred_automaticallyRNAi_primary
WBRNAi00046061Inferred_automaticallyRNAi_primary
WBRNAi00014182Inferred_automaticallyRNAi_primary
Expr_patternExpr2367
Expr2368
Expr1011702
Expr1031611
Expr1149952
Expr2013852
Expr2032092
Drives_constructWBCnstr00010791
WBCnstr00036077
Construct_productWBCnstr00036077
Microarray_results (19)
Expression_cluster (162)
Interaction (114)
Map_infoMapXPosition21.5469Error0.012103
PositivePositive_cloneF31F6Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4508
Pseudo_map_position
ReferenceWBPaper00005726
WBPaper00006504
WBPaper00025195
WBPaper00031333
WBPaper00035539
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene