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WormBase Tree Display for Gene: WBGene00003479

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Name Class

WBGene00003479EvidencePaper_evidenceWBPaper00006051
Person_evidenceWBPerson170
SMapS_parentSequenceY39H10A
IdentityVersion1
NameCGC_namemtm-9Person_evidenceWBPerson170
Sequence_nameY39H10A.3
Molecular_nameY39H10A.3a
Y39H10A.3a.1
CE26073
Y39H10A.3b
CE36959
Y39H10A.3b.1
Other_namecup-10
Y39H10A.bCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y39H10A.fCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y39H10A.3Accession_evidenceNDBBX284605
Public_namemtm-9
DB_infoDatabaseAceViewgene5E227
WormQTLgeneWBGene00003479
WormFluxgeneWBGene00003479
NDBlocus_tagCELE_Y39H10A.3
PanthergeneCAEEL|WormBase=WBGene00003479|UniProtKB=Q965W9
familyPTHR10807
NCBIgene178790
RefSeqproteinNM_182367.6
NM_071637.7
SwissProtUniProtAccQ965W9
UniProt_GCRPUniProtAccQ965W9
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmtm
Allele (128)
StrainWBStrain00033216
WBStrain00008043
RNASeq_FPKM (74)
GO_annotation (15)
OrthologWBGene00062182Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00028912Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00157076Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00129108Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00190107Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00090816Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00226755Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g1078Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g16050Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2783Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g22011Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17619Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g1100Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16940Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g16314Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g27Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g29Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g27792Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g26Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00002.g209Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-mtm-9Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g7599Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02919.g28397Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_05412Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_15284Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_15287Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_019162Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07096Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5522Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50006500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g13817Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242096Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00093285Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00267233Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000003871Saccharomyces cerevisiaeFrom_analysisOrthoFinder
Panther
PhylomeDB
FB:FBgn0035945Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-060929-612Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040724-223Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:14596Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:2442842Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:628840Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00003475Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003476Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003477Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021683Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003478Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionmtm-9 encodes a catalytically inactive myotubularin lipid phosphatase orthologous to human MTMR9 (OMIM:606260) that affects phosphoinositide 3-phosphate localization, and whose mutation blocks endocytosis by the coelomocytes of C. elegans; MTM-9 is believed to function as part of a complex with MTM-6A and it is predominantly localized to the coelomocyte cytoplasm, with some localization to the membrane.Paper_evidenceWBPaper00004883
WBPaper00006306
WBPaper00037794
WBPaper00044932
Curator_confirmedWBPerson48
WBPerson1843
WBPerson567
Date_last_updated02 Apr 2014 00:00:00
Automated_descriptionEnables phosphatase binding activity. Involved in pinocytosis and regulation of cell migration. Located in cytosol and plasma membrane. Expressed in several structures, including CAN; PDE; coelomocyte; epithelial cell; and vulva. Used to study centronuclear myopathy. Is an ortholog of human MTMR9 (myotubularin related protein 9).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:14717Homo sapiensPaper_evidenceWBPaper00006306
Curator_confirmedWBPerson324
Date_last_updated15 Oct 2018 00:00:00
Disease_relevanceMutations in the human myotubularin family of lipid phosphatases, are associated with myotubular myopathy (associated gene, MTM1) and Charcot-Marie-Tooth disease, a group of progressive demyelinating neuropathies that affect the peripheral nerves (associated gene, MTMR2); studies in C. elegans indicate that, elegans mtm-9 together with mtm-6, and possibly other myotubularins, act in the arf-6/ARF6, rme-1/Ehd pathway for endocytosis, suggesting that disruptions in this endocytic pathway may be one of the causes leading to disease.Homo sapiensCurator_confirmedWBPerson324
Date_last_updated05 Mar 2014 00:00:00
Models_disease_assertedWBDOannot00000278
Molecular_infoCorresponding_CDSY39H10A.3a
Y39H10A.3b
Corresponding_CDS_historyY39H10A.3:wp126
Y39H10A.3b:wp102
Corresponding_transcriptY39H10A.3a.1
Y39H10A.3b.1
Other_sequence (70)
Associated_featureWBsf718290
WBsf231602
WBsf231603
Experimental_infoRNAi_resultWBRNAi00097617Inferred_automaticallyRNAi_primary
WBRNAi00065085Inferred_automaticallyRNAi_primary
WBRNAi00056293Inferred_automaticallyRNAi_primary
WBRNAi00091925Inferred_automaticallyRNAi_primary
WBRNAi00020434Inferred_automaticallyRNAi_primary
WBRNAi00065086Inferred_automaticallyRNAi_primary
WBRNAi00091926Inferred_automaticallyRNAi_primary
WBRNAi00097613Inferred_automaticallyRNAi_primary
WBRNAi00097619Inferred_automaticallyRNAi_primary
Expr_patternExpr2826
Expr9224
Expr1016199
Expr1031595
Expr1159780
Expr2013813
Expr2032053
Drives_constructWBCnstr00010974
WBCnstr00013810
WBCnstr00036089
Construct_productWBCnstr00010974
WBCnstr00036089
Microarray_results (30)
Expression_cluster (132)
InteractionWBInteraction000031311
WBInteraction000113006
WBInteraction000354169
WBInteraction000374757
WBInteraction000388237
WBInteraction000501484
WBInteraction000562612
WBInteraction000562613
WBProcessWBbiopr:00000073
Map_infoMapVPosition-8.01374Error0.016451
PositivePositive_cloneY39H10AInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point3957
4277
Pos_neg_data10779
Reference (12)
MethodGene