WormBase Tree Display for Gene: WBGene00003046
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| WBGene00003046 | SMap | S_parent | Sequence | F37H8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lir-3 | Person_evidence | WBPerson351 | |||||
| Sequence_name | F37H8.1 | ||||||||
| Molecular_name | F37H8.1 | ||||||||
| F37H8.1.1 | |||||||||
| CE15994 | |||||||||
| Other_name | moag-2 | Paper_evidence | WBPaper00050937 | ||||||
| CELE_F37H8.1 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | lir-3 | ||||||||
| DB_info | Database | AceView | gene | 2L474 | |||||
| WormQTL | gene | WBGene00003046 | |||||||
| WormFlux | gene | WBGene00003046 | |||||||
| NDB | locus_tag | CELE_F37H8.1 | |||||||
| NCBI | gene | 174707 | |||||||
| RefSeq | protein | NM_063994.7 | |||||||
| SwissProt | UniProtAcc | O17862 | |||||||
| TREEFAM | TREEFAM_ID | TF316051 | |||||||
| UniProt_GCRP | UniProtAcc | O17862 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 11 May 2017 14:29:33 | WBPerson2970 | Name_change | Other_name | moag-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lir | ||||||||
| Allele (27) | |||||||||
| Strain | WBStrain00030541 | ||||||||
| WBStrain00030121 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00030853 | ||||||||
| 00030854 | |||||||||
| 00030855 | |||||||||
| 00030856 | |||||||||
| Ortholog (18) | |||||||||
| Paralog | WBGene00003045 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00003012 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00003044 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00010264 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013350 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018740 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018833 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00304808 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | lir-3 encodes a LIN-26-like zinc-finger protein that shares a unique C2H2 motif together with LIR-1, LIR-2 and LIN-26; as loss of lir-3 activity via mutation or RNAi results in no obvious abnormalities, the precise role of lir-3 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00003532 | |||||
| WBPaper00003777 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 05 Dec 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Expressed in muscle cell; neurons; spermatheca; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F37H8.1 | |||||||
| Corresponding_transcript | F37H8.1.1 | ||||||||
| Other_sequence | Acan_isotig13863 | ||||||||
| Oden_isotig27510 | |||||||||
| Dviv_isotig23173 | |||||||||
| Associated_feature | WBsf650550 | ||||||||
| WBsf989653 | |||||||||
| WBsf1013177 | |||||||||
| WBsf223905 | |||||||||
| Transcription_factor | WBTranscriptionFactor000499 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00103343 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031927 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046650 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014507 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7545 | ||||||||
| Expr13293 | |||||||||
| Expr1015599 | |||||||||
| Expr1031430 | |||||||||
| Expr1150520 | |||||||||
| Expr1200095 | |||||||||
| Expr1200096 | |||||||||
| Expr2013226 | |||||||||
| Expr2031457 | |||||||||
| Drives_construct | WBCnstr00009839 | ||||||||
| WBCnstr00012690 | |||||||||
| WBCnstr00036263 | |||||||||
| Construct_product | WBCnstr00021746 | ||||||||
| WBCnstr00036263 | |||||||||
| Regulate_expr_cluster | WBPaper00050937:lir-3(pk2183)_downregulated | ||||||||
| WBPaper00050937:lir-3(pk2183)_upregulated | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (70) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | II | Position | 3.34231 | Error | 0.003342 | |||
| Positive | Positive_clone | F37H8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4599 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003532 | ||||||||
| WBPaper00003777 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00048022 | |||||||||
| WBPaper00050937 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
