WormBase Tree Display for Gene: WBGene00003046
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WBGene00003046 | SMap | S_parent | Sequence | F37H8 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | lir-3 | Person_evidence | WBPerson351 | |||
Sequence_name | F37H8.1 | ||||||
Molecular_name | F37H8.1 | ||||||
F37H8.1.1 | |||||||
CE15994 | |||||||
Other_name | moag-2 | Paper_evidence | WBPaper00050937 | ||||
CELE_F37H8.1 | Accession_evidence | NDB | BX284602 | ||||
Public_name | lir-3 | ||||||
DB_info | Database | AceView | gene | 2L474 | |||
WormQTL | gene | WBGene00003046 | |||||
WormFlux | gene | WBGene00003046 | |||||
NDB | locus_tag | CELE_F37H8.1 | |||||
NCBI | gene | 174707 | |||||
RefSeq | protein | NM_063994.7 | |||||
SwissProt | UniProtAcc | O17862 | |||||
TREEFAM | TREEFAM_ID | TF316051 | |||||
UniProt_GCRP | UniProtAcc | O17862 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lir | ||||||
Allele (27) | |||||||
Strain | WBStrain00030541 | ||||||
WBStrain00030121 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00030853 | ||||||
00030854 | |||||||
00030855 | |||||||
00030856 | |||||||
Ortholog (18) | |||||||
Paralog | WBGene00003045 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WormBase-Compara | |||||||
WBGene00003012 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00003044 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00010264 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00013350 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00018740 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00018833 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00304808 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | lir-3 encodes a LIN-26-like zinc-finger protein that shares a unique C2H2 motif together with LIR-1, LIR-2 and LIN-26; as loss of lir-3 activity via mutation or RNAi results in no obvious abnormalities, the precise role of lir-3 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00003532 | |||
WBPaper00003777 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 05 Dec 2006 00:00:00 | ||||||
Automated_description | Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Expressed in muscle cell; neurons; spermatheca; and vulva. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F37H8.1 | |||||
Corresponding_transcript | F37H8.1.1 | ||||||
Other_sequence | Acan_isotig13863 | ||||||
Oden_isotig27510 | |||||||
Dviv_isotig23173 | |||||||
Associated_feature | WBsf650550 | ||||||
WBsf989653 | |||||||
WBsf1013177 | |||||||
WBsf223905 | |||||||
Transcription_factor | WBTranscriptionFactor000499 | ||||||
Experimental_info | RNAi_result | WBRNAi00103343 | Inferred_automatically | RNAi_primary | |||
WBRNAi00031927 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00046650 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014507 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr7545 | ||||||
Expr13293 | |||||||
Expr1015599 | |||||||
Expr1031430 | |||||||
Expr1150520 | |||||||
Expr1200095 | |||||||
Expr1200096 | |||||||
Expr2013226 | |||||||
Expr2031457 | |||||||
Drives_construct | WBCnstr00009839 | ||||||
WBCnstr00012690 | |||||||
WBCnstr00036263 | |||||||
Construct_product | WBCnstr00021746 | ||||||
WBCnstr00036263 | |||||||
Regulate_expr_cluster | WBPaper00050937:lir-3(pk2183)_downregulated | ||||||
WBPaper00050937:lir-3(pk2183)_upregulated | |||||||
Microarray_results (18) | |||||||
Expression_cluster (70) | |||||||
Interaction (12) | |||||||
Map_info | Map | II | Position | 3.34231 | Error | 0.003342 | |
Positive | Positive_clone | F37H8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4599 | |||||
Pseudo_map_position | |||||||
Reference | WBPaper00003532 | ||||||
WBPaper00003777 | |||||||
WBPaper00027309 | |||||||
WBPaper00048022 | |||||||
WBPaper00050937 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |