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WormBase Tree Display for Gene: WBGene00003008

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Name Class

WBGene00003008SMapS_parentSequenceY54G2A
IdentityVersion1
NameCGC_namelin-22Person_evidenceWBPerson261
Sequence_nameY54G2A.1
Molecular_nameY54G2A.1
Y54G2A.1.1
CE26703
Other_namehlh-9Person_evidenceWBPerson346
4D656Accession_evidenceEMBLAF304120
CELE_Y54G2A.1Accession_evidenceNDBBX284604
Public_namelin-22
DB_infoDatabase (9)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:30WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_info (11)
Disease_infoPotential_modelDOID:264Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5192)
Molecular_infoCorresponding_CDSY54G2A.1
Corresponding_transcriptY54G2A.1.1
Other_sequenceEX916391.1
Hbac_isotig05734
EG025731.1
HBC05050_1
HBC04228_1
Associated_featureWBsf660013
WBsf718055
WBsf718056
WBsf978797
WBsf1026934
WBsf1026935
WBsf1026936
Transcription_factorWBTranscriptionFactor000727
Experimental_infoRNAi_resultWBRNAi00057436Inferred_automaticallyRNAi_primary
Expr_pattern (11)
Drives_constructWBCnstr00004218
WBCnstr00036289
WBCnstr00039720
WBCnstr00039721
WBCnstr00039722
WBCnstr00039723
Construct_productWBCnstr00016691
WBCnstr00016896
WBCnstr00036289
Regulate_expr_clusterWBPaper00053295:lin-22(icb38)_downregulated
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053295:lin-22(ot267)_downregulated
WBPaper00053295:lin-22(ot267)_upregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053295:lin-22(ot269)_upregulated
Microarray_results (22)
Expression_clusterWBPaper00032528:L3_depleted
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_embryo_enriched
WBPaper00037950:intestine_embryo_SelectivelyEnriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00044426:rotenone_24h_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00046509:htz-1(ok3099)_downregulated
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056161:male_enriched_siRNA
WBPaper00056284:ints-5(RNAi)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056617:adr-1(gv6)_upregulated_embryo_protein
WBPaper00056826:SGP_biased
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058886:anp-1(ok608)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061527:sre-33-ZK1025.1_8337
WBPaper00061818:ELKS-1_interacting
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062497:xpf-1(tm2842)_upregulated
WBPaper00062554:MAGU-2_interacting
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00065331:100nM-ivermectin_downregulated
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065841:0_0
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
WBPaper00036286:Pattern_H
WBPaper00037113:Chlorpyrifos_Diazinon_16C_regulated
WBPaper00037113:Diazinon_16C_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_regulated_aging
WBPaper00041939:control_vs_EtBr-exposed_3h
WBPaper00041939:control_vs_UVC-exposed_3h
WBPaper00055899:nitroguanidine_regulated
InteractionWBInteraction000001026
WBInteraction000001027
WBInteraction000001592
WBInteraction000003146
WBInteraction000003346
WBInteraction000003359
WBInteraction000003387
WBInteraction000008720
WBInteraction000008721
WBInteraction000008722
WBInteraction000009321
WBInteraction000009467
WBInteraction000009476
WBInteraction000009636
WBInteraction000028818
WBInteraction000028873
WBInteraction000029393
WBInteraction000029394
WBInteraction000029732
WBInteraction000029733
WBInteraction000029734
WBInteraction000032831
WBInteraction000033944
WBInteraction000033978
WBInteraction000034377
WBInteraction000035360
WBInteraction000036327
WBInteraction000036346
WBInteraction000036628
WBInteraction000036745
WBInteraction000036858
WBInteraction000038605
WBInteraction000039045
WBInteraction000039047
WBInteraction000039049
WBInteraction000039863
WBInteraction000040413
WBInteraction000040801
WBInteraction000041321
WBInteraction000042734
WBInteraction000043137
WBInteraction000043492
WBInteraction000043547
WBInteraction000043555
WBInteraction000043993
WBInteraction000044367
WBInteraction000044418
WBInteraction000044449
WBInteraction000044832
WBInteraction000044833
WBInteraction000044834
WBInteraction000044843
WBInteraction000045358
WBInteraction000045402
WBInteraction000046005
WBInteraction000046006
WBInteraction000048447
WBInteraction000048691
WBInteraction000049078
WBInteraction000049262
WBInteraction000049725
WBInteraction000114619
WBInteraction000122596
WBInteraction000126205
WBInteraction000126401
WBInteraction000127353
WBInteraction000133171
WBInteraction000133643
WBInteraction000135836
WBInteraction000151163
WBInteraction000165172
WBInteraction000165173
WBInteraction000166021
WBInteraction000166850
WBInteraction000173360
WBInteraction000173635
WBInteraction000174331
WBInteraction000196881
WBInteraction000215128
WBInteraction000233001
WBInteraction000238806
WBInteraction000238808
WBInteraction000245421
WBInteraction000256886
WBInteraction000279236
WBInteraction000300523
WBInteraction000339819
WBInteraction000351279
WBInteraction000351282
WBInteraction000360730
WBInteraction000465743
WBInteraction000501085
WBInteraction000501425
WBInteraction000562985
WBInteraction000569421
WBInteraction000578672
WBInteraction000580136
WBInteraction000581364
WBInteraction000582063
WBInteraction000582718
WBInteraction000586633
Map_infoMapIVPosition-6.65585Error0.044343
Well_ordered
PositivePositive_cloneY54G2AInferred_automaticallyFrom sequence, transcript, pseudogene data
Y94H6
Mapping_dataMulti_point683
684
691
Reference (147)
RemarkThe attached sequence (Y54G2A.1) was previously connected to him-5 by mistake [030212 krb]
MethodGene