WormBase Tree Display for Gene: WBGene00002996

WBGene00002996 SMap: S_parent: Sequence: Y54G11A
  Identity: Version: 2
    Name: CGC_name: lin-7 Person_evidence: WBPerson261
      Sequence_name: Y54G11A.10
      Molecular_name: Y54G11A.10a
        Y54G11A.10a.1
        CE43589
        Y54G11A.10b
        CE43616
        Y54G11A.10b.1
      Other_name: CELE_Y54G11A.10 Accession_evidence: NDB BX284602
      Public_name: lin-7
    DB_info: Database: WormQTL gene WBGene00002996
        SignaLink protein WBGene00002996
        WormFlux gene WBGene00002996
        NDB locus_tag CELE_Y54G11A.10
        Panther gene CAEEL|WormBase=WBGene00002996|UniProtKB=A5PEX5
          family PTHR14063
        NCBI gene 175089
        RefSeq protein NM_064581.4
            NM_001129192.6
        TREEFAM TREEFAM_ID TF316850
        TrEMBL UniProtAcc A5PEX5
            Q9U245
        UniProt_GCRP UniProtAcc A5PEX5
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 06 Mar 2009 10:15:15 WBPerson1983 Event: Split_into: WBGene00185067
      Split_into: WBGene00185067
    Status: Live
  Gene_info (13)
  Molecular_info: Corresponding_CDS: Y54G11A.10a
      Y54G11A.10b
    Corresponding_CDS_history: Y54G11A.10:wp52
      Y54G11A.10a:wp201
      Y54G11A.10b:wp201
    Corresponding_transcript: Y54G11A.10a.1
      Y54G11A.10b.1
    Other_sequence (34)
    Associated_feature: WBsf650744
      WBsf224266
  Experimental_info: RNAi_result (21)
    Expr_pattern: Expr690
      Expr15957
      Expr15960
      Expr15963
      Expr1021328
      Expr1031393
      Expr1160856
      Expr2013200
      Expr2031432
    Drives_construct: WBCnstr00000521
      WBCnstr00012493
      WBCnstr00036298
    Construct_product: WBCnstr00000520
      WBCnstr00000720
      WBCnstr00012493
      WBCnstr00036298
    Antibody: WBAntibody00000108
      WBAntibody00000109
      WBAntibody00000974
      WBAntibody00001092
    Microarray_results (21)
    Expression_cluster: WBPaper00035073:mitochondria_protein
      WBPaper00035269:cde-1_regulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038061:aldicarb_upregulated
      WBPaper00040285:H2S_24hr_upregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049377:MWCNT_upregulated
      WBPaper00049498:npr-1(ur89)_regulated_6
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050412:cco-1(RNAi)_upregulated_N2
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:stavudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061340:Intestinal_and_rectal_muscle
      WBPaper00061340:Parents_of_Y_DA6_DA7_DA9
      WBPaper00061527:Y39G10AR.18_4775-gld-4
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062554:MAGU-2_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      cgc4489_group_5
      WBPaper00025032:cluster_147
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00034661:AgNPs_downregulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00037113:Chlorpyrifos_Diazinon_16C_regulated
      WBPaper00037611:GLD-2-associated
      WBPaper00037611:RNP-8-associated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040963:TA300_down
      WBPaper00041370:spg-7(RNAi)_upregulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042548:miRISC_enriched
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045263:ProLongevity-mtROS_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc6390]:mixed_oogenesis-somatic
    Interaction (128)
  Map_info: Map: II Position: 22.9062 Error: 0.001213
    Well_ordered
    Positive: Positive_clone: Y54G11A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: 2_point: 493
        3926
        4226
        4227
        5206
        5209
        5210
      Multi_point (15)
      Pos_neg_data: 4213
        4438
        4508
        4509
        4510
  Reference (138)
  Method: Gene