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WormBase Tree Display for Gene: WBGene00002992

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Name Class

WBGene00002992SMapS_parentSequenceCHROMOSOME_IV
IdentityVersion2
NameCGC_namelin-3Person_evidenceWBPerson261
Sequence_nameF36H1.4
Molecular_name (27)
Other_namelet-94
sli-4Paper_evidenceWBPaper00028495
Person_evidenceWBPerson625
CELE_F36H1.4Accession_evidenceNDBBX284604
Public_namelin-3
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:30WBPerson1971EventImportedInitial conversion from geneace
205 Oct 2006 10:39:45WBPerson2970Name_changeOther_namesli-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
Reference_alleleWBVar00143992
Allele (126)
Legacy_informatione1417 : adult hermaphrodite vulvaless (penetrance 89%); HME2; adult male wildtype ME2. NA4 (n378 (resembles e1417); n1059 (early larval lethal); n1058 (early larval lethal/sterile adult ME3)).
See also e1417, n378, n1058, n1059, s751, s1263, s1750
[C.elegansII] e1417 : adult hermaphrodite vulvaless (penetrance 89%); HME2; adult male wildtype ME2. OA>10: n378 (resembles e1417)d,; n1059 (early larval lethal), n1058 (early larval lethal/sterile adult),s751 (pka let-94, late larval lethal, s751/Df early larval lethal), s1750 (homozygote and hemizygote mid larval lethal), etc. Cloned: encodes proteins with similarity to EGF family. Transgene overexpression leads to Muv(extra vulval differentiation). [Hill and Sternberg 1992; BC; MT; PS]
Strain (13)
RNASeq_FPKM (74)
GO_annotation (32)
Ortholog (21)
Structured_descriptionConcise_descriptionlin-3 encodes a member of the EGF family of peptide growth factors that affects induction of vulval development, viability, ovulation, behavioral quiescence after stress, and male spicule development; it acts genetically upstream of its presumptive receptor let-23, and is expressed in multiple locations consistent with it acting as a localized ligand; for example, the anchor cell of the developing gonad, which induces vulval development.Paper_evidenceWBPaper00000496
WBPaper00001573
WBPaper00045813
WBPaper00002043
Person_evidenceWBPerson625
Curator_confirmedWBPerson324
WBPerson567
Date_last_updated13 Jul 2015 00:00:00
Automated_descriptionEnables receptor ligand activity. Involved in several processes, including positive regulation of ovulation; positive regulation of vulval development; and reproductive process. Located in plasma membrane. Expressed in several structures, including excretory canal; germ line; hermaphrodite gonad; rectal epithelial cell; and vulF.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF36H1.4a
F36H1.4b
F36H1.4c
F36H1.4d
F36H1.4e
F36H1.4f
F36H1.4g
F36H1.4h
Corresponding_CDS_historyF36H1.4:wp52
Corresponding_transcript (11)
Other_sequenceCR09820
CRC07071_1
CJC02266_1
Associated_feature (12)
Experimental_infoRNAi_result (54)
Expr_pattern (16)
Drives_construct (19)
Construct_product (27)
Microarray_results (44)
Expression_cluster (158)
InteractionWBInteraction000000126
WBInteraction000000130
WBInteraction000000218
WBInteraction000000220
WBInteraction000000285
WBInteraction000000336
WBInteraction000000370
WBInteraction000000527
WBInteraction000000609
WBInteraction000000672
WBInteraction000000673
WBInteraction000000815
WBInteraction000000939
WBInteraction000000965
WBInteraction000000977
WBInteraction000001117
WBInteraction000001414
WBInteraction000001661
WBInteraction000001695
WBInteraction000001696
WBInteraction000001697
WBInteraction000002270
WBInteraction000002770
WBInteraction000002771
WBInteraction000002834
WBInteraction000003019
WBInteraction000003192
WBInteraction000003682
WBInteraction000003867
WBInteraction000003868
WBInteraction000003869
WBInteraction000004956
WBInteraction000004965
WBInteraction000004999
WBInteraction000005024
WBInteraction000005025
WBInteraction000005052
WBInteraction000005053
WBInteraction000005063
WBInteraction000005184
WBInteraction000005247
WBInteraction000005248
WBInteraction000005640
WBInteraction000005641
WBInteraction000005642
WBInteraction000006030
WBInteraction000006110
WBInteraction000006162
WBInteraction000006533
WBInteraction000006569
WBInteraction000006634
WBInteraction000006737
WBInteraction000006794
WBInteraction000007038
WBInteraction000007056
WBInteraction000007092
WBInteraction000007750
WBInteraction000007761
WBInteraction000007762
WBInteraction000007763
WBInteraction000007764
WBInteraction000007765
WBInteraction000007766
WBInteraction000007767
WBInteraction000007771
WBInteraction000008486
WBInteraction000008786
WBInteraction000008788
WBInteraction000009162
WBInteraction000009222
WBInteraction000009223
WBInteraction000009586
WBInteraction000009627
WBInteraction000009718
WBInteraction000009962
WBInteraction000028409
WBInteraction000028500
WBInteraction000028501
WBInteraction000028835
WBInteraction000029217
WBInteraction000029235
WBInteraction000029283
WBInteraction000029356
WBInteraction000029357
WBInteraction000029358
WBInteraction000029927
WBInteraction000029935
WBInteraction000030383
WBInteraction000030576
WBInteraction000030984
WBInteraction000031055
WBInteraction000031058
WBInteraction000031059
WBInteraction000031060
WBInteraction000050733
WBInteraction000052345
WBInteraction000052350
WBInteraction000126140
WBInteraction000126177
WBInteraction000126189
WBInteraction000126208
WBInteraction000126209
WBInteraction000126210
WBInteraction000126211
WBInteraction000126212
WBInteraction000126225
WBInteraction000126227
WBInteraction000126230
WBInteraction000126428
WBInteraction000126549
WBInteraction000126557
WBInteraction000126625
WBInteraction000126963
WBInteraction000127269
WBInteraction000127459
WBInteraction000127460
WBInteraction000127461
WBInteraction000133171
WBInteraction000133697
WBInteraction000133698
WBInteraction000136068
WBInteraction000136069
WBInteraction000136070
WBInteraction000136071
WBInteraction000136391
WBInteraction000136392
WBInteraction000138116
WBInteraction000138781
WBInteraction000138782
WBInteraction000139471
WBInteraction000143980
WBInteraction000145933
WBInteraction000146863
WBInteraction000151377
WBInteraction000151378
WBInteraction000151379
WBInteraction000159861
WBInteraction000161912
WBInteraction000165487
WBInteraction000165773
WBInteraction000165887
WBInteraction000165895
WBInteraction000165933
WBInteraction000165946
WBInteraction000165947
WBInteraction000165948
WBInteraction000165949
WBInteraction000165950
WBInteraction000165951
WBInteraction000165952
WBInteraction000165953
WBInteraction000165954
WBInteraction000165955
WBInteraction000166014
WBInteraction000166339
WBInteraction000178858
WBInteraction000184509
WBInteraction000184777
WBInteraction000188588
WBInteraction000190477
WBInteraction000199975
WBInteraction000204360
WBInteraction000208737
WBInteraction000214658
WBInteraction000214663
WBInteraction000214664
WBInteraction000214665
WBInteraction000214666
WBInteraction000214667
WBInteraction000214668
WBInteraction000214669
WBInteraction000214670
WBInteraction000221122
WBInteraction000221123
WBInteraction000228872
WBInteraction000233250
WBInteraction000241167
WBInteraction000247241
WBInteraction000258513
WBInteraction000266782
WBInteraction000272796
WBInteraction000272797
WBInteraction000272798
WBInteraction000272799
WBInteraction000272800
WBInteraction000273041
WBInteraction000300036
WBInteraction000308161
WBInteraction000315326
WBInteraction000323157
WBInteraction000324307
WBInteraction000324308
WBInteraction000324311
WBInteraction000324312
WBInteraction000324313
WBInteraction000324314
WBInteraction000324315
WBInteraction000326705
WBInteraction000338532
WBInteraction000343475
WBInteraction000347378
WBInteraction000358943
WBInteraction000372880
WBInteraction000372881
WBInteraction000372882
WBInteraction000372883
WBInteraction000372992
WBInteraction000378995
WBInteraction000381905
WBInteraction000393639
WBInteraction000416835
WBInteraction000416836
WBInteraction000416837
WBInteraction000430022
WBInteraction000444009
WBInteraction000454743
WBInteraction000457252
WBInteraction000457253
WBInteraction000457254
WBInteraction000457256
WBInteraction000466750
WBInteraction000466752
WBInteraction000466753
WBInteraction000471677
WBInteraction000500335
WBInteraction000500498
WBInteraction000500499
WBInteraction000500655
WBInteraction000500656
WBInteraction000501565
WBInteraction000501966
WBInteraction000502379
WBInteraction000502380
WBInteraction000502381
WBInteraction000502653
WBInteraction000502890
WBInteraction000502975
WBInteraction000502976
WBInteraction000502977
WBInteraction000503718
WBInteraction000503719
WBInteraction000503720
WBInteraction000503721
WBInteraction000503722
WBInteraction000503723
WBInteraction000503724
WBInteraction000503725
WBInteraction000503726
WBInteraction000503727
WBInteraction000503728
WBInteraction000503729
WBInteraction000503730
WBInteraction000503731
WBInteraction000503732
WBInteraction000503733
WBInteraction000504227
WBInteraction000504329
WBInteraction000504862
WBInteraction000505038
WBInteraction000505213
WBInteraction000505214
WBInteraction000517761
WBInteraction000517930
WBInteraction000517931
WBInteraction000517932
WBInteraction000517933
WBInteraction000518893
WBInteraction000520204
WBInteraction000520949
WBInteraction000521625
WBInteraction000521626
WBInteraction000521627
WBInteraction000523938
WBInteraction000524088
WBInteraction000524139
WBInteraction000524141
WBInteraction000524143
WBInteraction000524351
WBInteraction000524354
WBInteraction000524526
WBInteraction000538539
WBInteraction000538543
WBInteraction000543594
WBInteraction000550489
WBInteraction000550490
WBInteraction000550491
WBInteraction000550492
WBInteraction000550616
WBInteraction000550617
WBInteraction000550618
WBInteraction000550619
WBInteraction000554931
WBInteraction000555482
WBInteraction000555531
WBInteraction000555750
WBInteraction000555751
WBInteraction000556184
WBInteraction000556880
WBInteraction000558272
WBProcessWBbiopr:00000020
WBbiopr:00000044
WBbiopr:00000067
WBbiopr:00000070
WBbiopr:00000071
Map_infoMapIVPosition4.82027Error0.004649
Well_ordered
PositivePositive_cloneF36H1Inferred_automaticallyFrom sequence, transcript, pseudogene data
PS#001
Mapping_data2_point3296
Multi_point117
382
383
603
678
774
1135
1137
1276
1640
Pos_neg_data (16)
Reference (361)
RemarkUpdated sequence connections to take account of splice variants. [02/03/28 krb]
MethodGene