WormBase Tree Display for Gene: WBGene00002977
expand all nodes | collapse all nodes | view schema
| WBGene00002977 | SMap | S_parent | Sequence | Y105E8A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lev-10 | |||||||
| Sequence_name | Y105E8A.7 | ||||||||
| Molecular_name | Y105E8A.7a | ||||||||
| Y105E8A.7a.1 | |||||||||
| CE29845 | |||||||||
| Y105E8A.7b | |||||||||
| CE36334 | |||||||||
| Y105E8A.7e | |||||||||
| CE43607 | |||||||||
| Y105E8A.7b.1 | |||||||||
| Y105E8A.7e.1 | |||||||||
| Other_name | 1O991 | Inferred_automatically | |||||||
| Date_last_updated | 15 Apr 2005 00:00:00 | ||||||||
| Y105E8E.f | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_LEV-10 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | lev-10 | ||||||||
| DB_info | Database | AceView | gene | 1O991 | |||||
| WormFlux | gene | WBGene00002977 | |||||||
| NDB | locus_tag | CELE_LEV-10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002977|UniProtKB=G5EDX3 | |||||||
| family | PTHR45645 | ||||||||
| NCBI | gene | 24105310 | |||||||
| RefSeq | protein | NM_001265420.4 | |||||||
| NM_001026520.5 | |||||||||
| NM_001373661.2 | |||||||||
| TREEFAM | TREEFAM_ID | TF318542 | |||||||
| TrEMBL | UniProtAcc | G5EER3 | |||||||
| C0Z3M3 | |||||||||
| G5EDX3 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EDX3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 23 Jul 2004 14:58:35 | WBPerson1983 | Name_change | Sequence_name | Y105E8A.7 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lev | ||||||||
| Reference_allele | WBVar00275212 | ||||||||
| Allele (215) | |||||||||
| Strain | WBStrain00031835 | ||||||||
| WBStrain00032391 | |||||||||
| WBStrain00040922 | |||||||||
| WBStrain00007198 | |||||||||
| WBStrain00047366 | |||||||||
| WBStrain00047364 | |||||||||
| WBStrain00047367 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00006719 | ||||||||
| 00006720 | |||||||||
| 00006721 | |||||||||
| 00006722 | |||||||||
| 00014960 | |||||||||
| Ortholog (35) | |||||||||
| Paralog (48) | |||||||||
| Structured_description | Concise_description | lev-10 encodes a CUB and LDLa domain-containing type I transmembrane protein; LEV-10 activity is required cell autonomously in muscle cells for clustering of post-synaptic UNC-29-containing ionotropic acetylcholine receptors (AChR); when expressed in body wall muscles, LEV-10 localizes to cholinergic neuromuscular junctions; the LEV-10 extracellular region is sufficient for rescue of AChR clustering. | Paper_evidence | WBPaper00000484 | |||||
| WBPaper00024414 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 04 Jun 2008 00:00:00 | ||||||||
| Automated_description | Located in membrane; synapse; and varicosity. Expressed in amphid neurons; head neurons; phasmid neurons; reproductive system; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y105E8A.7a | |||||||
| Y105E8A.7b | |||||||||
| Y105E8A.7e | |||||||||
| Corresponding_CDS_history | Y105E8A.30a:wp128 | ||||||||
| Y105E8A.30b:wp128 | |||||||||
| Corresponding_transcript | Y105E8A.7a.1 | ||||||||
| Y105E8A.7b.1 | |||||||||
| Y105E8A.7e.1 | |||||||||
| Other_sequence | EY462982.1 | ||||||||
| GT571380.1 | |||||||||
| GPC01279_1 | |||||||||
| MI01984 | |||||||||
| SRC08597_1 | |||||||||
| FC809924.1 | |||||||||
| DA04905 | |||||||||
| MPC00013_1 | |||||||||
| Associated_feature (18) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00089877 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036499 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106860 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004484 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090195 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090037 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089866 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3455 | ||||||||
| Expr16343 | |||||||||
| Expr1031377 | |||||||||
| Expr1158772 | |||||||||
| Expr2013083 | |||||||||
| Expr2031315 | |||||||||
| Drives_construct | WBCnstr00042963 | ||||||||
| Antibody | WBAntibody00000766 | ||||||||
| WBAntibody00000767 | |||||||||
| WBAntibody00001989 | |||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (133) | |||||||||
| Interaction | WBInteraction000052952 | ||||||||
| WBInteraction000501249 | |||||||||
| WBInteraction000501546 | |||||||||
| WBInteraction000504039 | |||||||||
| WBInteraction000504745 | |||||||||
| WBInteraction000518492 | |||||||||
| WBInteraction000518493 | |||||||||
| WBInteraction000524392 | |||||||||
| WBInteraction000540194 | |||||||||
| WBInteraction000540251 | |||||||||
| Map_info | Positive | Positive_clone | Y105E8A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Mapping_data | 2_point | 211 | |||||||
| 212 | |||||||||
| 213 | |||||||||
| 6107 | |||||||||
| Multi_point | 203 | ||||||||
| 3242 | |||||||||
| 202 | |||||||||
| 249 | |||||||||
| 2176 | |||||||||
| 2177 | |||||||||
| Pos_neg_data (13) | |||||||||
| Interpolated_map_position | I | 24.6833 | |||||||
| Reference (46) | |||||||||
| Remark | This single locus has two gene products, lev-10 and eat-18 | ||||||||
| Method | Gene |
