WormBase Tree Display for Gene: WBGene00001863
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| WBGene00001863 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | him-4 | Person_evidence | WBPerson261 | |||||
| Sequence_name | F15G9.4 | ||||||||
| Molecular_name (18) | |||||||||
| Other_name | cpg-14 | Paper_evidence | WBPaper00053350 | ||||||
| CELE_F15G9.4 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | him-4 | ||||||||
| DB_info | Database | AceView | gene | XK371 | |||||
| WormQTL | gene | WBGene00001863 | |||||||
| WormFlux | gene | WBGene00001863 | |||||||
| NDB | locus_tag | CELE_F15G9.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001863|UniProtKB=G5EDG4 | |||||||
| family | PTHR23277 | ||||||||
| NCBI | gene | 181187 | |||||||
| RefSeq | protein | NM_001373451.2 | |||||||
| NM_001129660.3 | |||||||||
| NM_077234.7 | |||||||||
| NM_001029411.3 | |||||||||
| NM_001373450.2 | |||||||||
| NM_001373449.3 | |||||||||
| TrEMBL | UniProtAcc | G5EG33 | |||||||
| A4UVK0 | |||||||||
| G5EDG4 | |||||||||
| G5ED27 | |||||||||
| A0A4V0IK01 | |||||||||
| A0A4V0ILL2 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EG33 | |||||||
| OMIM | gene | 608548 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | him | ||||||||
| Reference_allele | WBVar00143876 | ||||||||
| Allele (574) | |||||||||
| Possibly_affected_by | WBVar02152948 | ||||||||
| WBVar02152949 | |||||||||
| WBVar02153295 | |||||||||
| Legacy_information | See also e1266, e1267 | ||||||||
| [C.elegansII] e1267icr : self-progeny 6% XO male, very low brood size; frequent gonad eversion with rupture at vulva; 2% nullo-X ova. Male gonad abnormal, testis fails to connect with proctodeum, may be twice reflexed. Mua (muscle attachment) phenotype, general defects in transhypodermal anchorage. ES2 (adult). ME0. OA2: e1266icr (same phenotypes), rh166. [Hodgkin et al. 1979; NJ] | |||||||||
| Strain | WBStrain00033418 | ||||||||
| WBStrain00033419 | |||||||||
| WBStrain00002491 | |||||||||
| WBStrain00003952 | |||||||||
| WBStrain00004284 | |||||||||
| WBStrain00004285 | |||||||||
| WBStrain00006190 | |||||||||
| WBStrain00006191 | |||||||||
| WBStrain00050775 | |||||||||
| WBStrain00054901 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00001000 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00004130 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006436 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006759 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006820 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00011880 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017657 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019727 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | The him-4 gene encodes a large (5198-residue) extracellular protein, called 'hemicentin', that belongs to the immunoglobulin superfamily. | Paper_evidence | WBPaper00004627 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | An extracellular matrix structural constituent. Involved in basement membrane disassembly. Located in basement membrane. Expressed in body wall musculature; germ cell; germ line; gonad; and pharynx. Human ortholog(s) of this gene implicated in age related macular degeneration 1. Is an ortholog of human HMCN1 (hemicentin 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110014 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19194) | ||||
| Molecular_info | Corresponding_CDS | F15G9.4a | |||||||
| F15G9.4b | |||||||||
| F15G9.4c | |||||||||
| F15G9.4d | |||||||||
| F15G9.4e | |||||||||
| F15G9.4f | |||||||||
| Corresponding_CDS_history | F15G9.4d:wp271 | ||||||||
| Corresponding_transcript | F15G9.4a.1 | ||||||||
| F15G9.4b.1 | |||||||||
| F15G9.4c.1 | |||||||||
| F15G9.4d.1 | |||||||||
| F15G9.4e.1 | |||||||||
| F15G9.4f.1 | |||||||||
| Other_sequence (14) | |||||||||
| Associated_feature (34) | |||||||||
| Experimental_info | RNAi_result (23) | ||||||||
| Expr_pattern (12) | |||||||||
| Drives_construct (16) | |||||||||
| Construct_product | WBCnstr00013527 | ||||||||
| Antibody | WBAntibody00001113 | ||||||||
| Microarray_results (31) | |||||||||
| Expression_cluster (211) | |||||||||
| Interaction (20) | |||||||||
| Map_info | Map | X | Position | 1.4617 | Error | 0.010587 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | F15G9 | Person_evidence | WBPerson673 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| W07D2 | Person_evidence | WBPerson673 | |||||||
| Mapping_data | 2_point | 286 | |||||||
| 287 | |||||||||
| Multi_point | 426 | ||||||||
| 3207 | |||||||||
| 3208 | |||||||||
| 3209 | |||||||||
| 3210 | |||||||||
| 3211 | |||||||||
| 3212 | |||||||||
| 3629 | |||||||||
| Reference (74) | |||||||||
| Method | Gene |
