WormBase Tree Display for Gene: WBGene00001402
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WBGene00001402 | SMap | S_parent | Sequence | F21H12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | fbf-2 | Person_evidence | WBPerson320 | |||||
Sequence_name | F21H12.5 | ||||||||
Molecular_name | F21H12.5 | ||||||||
F21H12.5.1 | |||||||||
CE01916 | |||||||||
Other_name | FBF2 | Paper_evidence | WBPaper00012973 | ||||||
FBF | Paper_evidence | WBPaper00053101 | |||||||
WBPaper00053705 | |||||||||
CELE_F21H12.5 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | fbf-2 | ||||||||
DB_info | Database | AceView | gene | 2G380 | |||||
WormQTL | gene | WBGene00001402 | |||||||
WormFlux | gene | WBGene00001402 | |||||||
NDB | locus_tag | CELE_F21H12.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001402|UniProtKB=Q09312 | |||||||
family | PTHR12537 | ||||||||
NCBI | gene | 174017 | |||||||
RefSeq | protein | NM_001381445.2 | |||||||
SwissProt | UniProtAcc | Q09312 | |||||||
TREEFAM | TREEFAM_ID | TF318622 | |||||||
UniProt_GCRP | UniProtAcc | Q09312 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbf | ||||||||
Allele (52) | |||||||||
Legacy_information | [Gallegos M, Zhang B] fbf-2(RNAi) animals produce excess sperm and no oocytes (Mog phenotype). Encodes fem-3 PME RNA binding protein, 91% identical to FBF-1. Predicted gene F21H12.5 | ||||||||
Strain | WBStrain00022611 | ||||||||
WBStrain00022612 | |||||||||
WBStrain00022628 | |||||||||
WBStrain00022640 | |||||||||
WBStrain00022665 | |||||||||
WBStrain00022345 | |||||||||
WBStrain00022394 | |||||||||
WBStrain00022449 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (13) | |||||||||
Ortholog | WBGene00067518 | Caenorhabditis remanei | From_analysis | OMA | |||||
Inparanoid_8 | |||||||||
WBGene00071258 | Caenorhabditis remanei | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WBGene00025706 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WBGene00025707 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00034222 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WBGene00140206 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00153087 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00126052 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00100824 | Pristionchus pacificus | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
WBGene00224613 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
WBGene00227366 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
CBOVI.g5374 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g11873 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP21.g1934 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP28.g1402 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g12484 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP32.g16457 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP32.g16466 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g9345 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g9352 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_00025.g1524 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_00094.g4173 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_12998.g24025 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g16434 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g02937 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
Pan_g1916 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
Pan_g20286 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
Sp34_20124000 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrII_pilon.g4684 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00245171 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00247535 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00280223 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00265279 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
Paralog | WBGene00001401 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004239 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00022257 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004241 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004243 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004242 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004240 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WBGene00004244 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00004245 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | fbf-2 encodes an RNA-binding protein that is one of 11 C. elegans members of the PUF family (Pumilio and FBF) of translational regulators; FBF-2 is nearly identical to FBF-1 with which it is largely redundant in regulating two aspects of germline development: 1)maintenance of stem cell proliferation, and 2)the hermaphroditic switch between spermatogenesis and oogenesis; in maintaining germline stem cells, the FBF proteins, acting through NOS-3, negatively regulate the activity of gld-1 mRNA, which encodes a translational repressor required for meiotic entry; in regulating the sperm-to-oocyte switch, the FBFs act downstream of GLD-3 to negatively regulate the activity of fem-3 mRNA, which encodes a novel protein required for germline sex determination; consistent with their role in germline development, FBF-1 and FBF-2 are expressed in the germline cytoplasm, becoming enriched in the mitotic region during the L4 larval and adult stages. | Paper_evidence | WBPaper00002949 | |||||
WBPaper00005265 | |||||||||
WBPaper00005566 | |||||||||
WBPaper00006369 | |||||||||
WBPaper00018711 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 24 Sep 2004 00:00:00 | ||||||||
Automated_description | Enables mRNA 3'-UTR binding activity. Involved in negative regulation of translation. Located in P granule. Used to study obesity. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:9970 | Homo sapiens | Paper_evidence | WBPaper00061889 | ||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 28 Jun 2022 00:00:00 | ||||||||
Models_disease_in_annotation | WBDOannot00001264 | ||||||||
Molecular_info | Corresponding_CDS | F21H12.5 | |||||||
Corresponding_transcript | F21H12.5.1 | ||||||||
Other_sequence | EX544358.1 | ||||||||
Oden_isotig19477 | |||||||||
PP02603 | |||||||||
PPC01861_1 | |||||||||
EX564883.1 | |||||||||
GW916430.1 | |||||||||
CJC02888_1 | |||||||||
Associated_feature | WBsf223129 | ||||||||
Gene_product_binds | WBsf027922 | ||||||||
WBsf899551 | |||||||||
WBsf899552 | |||||||||
WBsf899553 | |||||||||
WBsf899554 | |||||||||
Transcription_factor | WBTranscriptionFactor000103 | ||||||||
Experimental_info | RNAi_result | WBRNAi00061203 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00066607 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027386 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00074174 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092447 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087353 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087348 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091432 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027294 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087350 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087344 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061200 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00074172 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00094039 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092450 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117256 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092444 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00082713 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077135 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061202 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00045249 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00025169 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087343 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061209 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078207 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061205 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092448 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00074173 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087347 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087354 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077138 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061676 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087357 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077136 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077433 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087342 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061201 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00082421 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00074171 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078206 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00074176 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086638 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092445 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00072429 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00072430 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087345 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087349 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087355 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087346 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087352 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061208 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00082442 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061206 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00074170 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00025795 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061207 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00013710 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00071150 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00016250 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00074175 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00064692 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00064571 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00031240 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092449 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075630 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087356 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061204 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00064611 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087351 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00074169 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (12) | |||||||||
Drives_construct | WBCnstr00005290 | ||||||||
WBCnstr00036968 | |||||||||
Construct_product | WBCnstr00005274 | ||||||||
WBCnstr00015117 | |||||||||
WBCnstr00036968 | |||||||||
WBCnstr00040359 | |||||||||
Regulate_expr_cluster | WBPaper00055804:FBF-1-FBF-2-associated_oogenic-enriched | ||||||||
WBPaper00055804:FBF-1-FBF-2-associated_spermatogenic-enriched | |||||||||
Antibody | WBAntibody00000785 | ||||||||
WBAntibody00000965 | |||||||||
WBAntibody00001086 | |||||||||
Microarray_results (16) | |||||||||
Expression_cluster (117) | |||||||||
Interaction (93) | |||||||||
Map_info | Map | II | Position | -0.523905 | Error | 0.013695 | |||
Positive | Positive_clone | F21H12 | Author_evidence | (genome sequence, | |||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
Mapping_data | Multi_point | 4304 | |||||||
4305 | |||||||||
4907 | |||||||||
Pseudo_map_position | |||||||||
Reference (136) | |||||||||
Picture | WBPicture0000013095 | ||||||||
Remark | Data extracted from Zhang et al. (1997) | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |