WormBase Tree Display for Gene: WBGene00001324
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| WBGene00001324 | SMap | S_parent | Sequence | R11E3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | eor-1 | Person_evidence | WBPerson637 | |||||
| Sequence_name | R11E3.6 | ||||||||
| Molecular_name | R11E3.6a | ||||||||
| R11E3.6a.1 | |||||||||
| CE19548 | |||||||||
| R11E3.6b | |||||||||
| CE48689 | |||||||||
| R11E3.6b.1 | |||||||||
| Other_name | CELE_R11E3.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | eor-1 | ||||||||
| DB_info | Database | AceView | gene | 4F558 | |||||
| WormQTL | gene | WBGene00001324 | |||||||
| SignaLink | protein | WBGene00001324 | |||||||
| WormFlux | gene | WBGene00001324 | |||||||
| NDB | locus_tag | CELE_R11E3.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001324|UniProtKB=G5EDU4 | |||||||
| family | PTHR24388 | ||||||||
| NCBI | gene | 177249 | |||||||
| RefSeq | protein | NM_001380208.1 | |||||||
| NM_001380207.3 | |||||||||
| TrEMBL | UniProtAcc | U4PEC2 | |||||||
| G5EDU4 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EDU4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | eor | ||||||||
| Allele (100) | |||||||||
| Strain | WBStrain00031868 | ||||||||
| WBStrain00035410 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Contained_in_operon | CEOP4152 | ||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00045068 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||
| WBGene00012405 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00021387 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018959 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021374 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | eor-1 encodes an ortholog of the human BTB/zinc-finger transcription factor PLZF (OMIM:176797), which is is found as a retinoic acid receptor alpha (RARA) fusion in acute promyelocytic leukemia (APL); EOR-1 positively regulates RAS/RAF-mediated signalling during excretory system development, as well as RAS/RAF- and WNT-mediated signalling during P12 fate specification; EOR-1 may function with EOR-2 and Hox genes to control the expression of Ras- and Wnt-responsive genes. | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00005250 | |||||||||
| WBPaper00005344 | |||||||||
| WBPaper00005412 | |||||||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including determination of adult lifespan; nematode male tail tip morphogenesis; and signal transduction. Located in nucleus. Expressed in several structures, including dorsal nerve cord; gonad; pharynx; and vulval precursor cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R11E3.6a | |||||||
| R11E3.6b | |||||||||
| Corresponding_transcript | R11E3.6a.1 | ||||||||
| R11E3.6b.1 | |||||||||
| Other_sequence (26) | |||||||||
| Associated_feature | WBsf651781 | ||||||||
| WBsf667915 | |||||||||
| WBsf667916 | |||||||||
| WBsf667917 | |||||||||
| WBsf978704 | |||||||||
| WBsf996396 | |||||||||
| WBsf1017314 | |||||||||
| WBsf230018 | |||||||||
| Gene_product_binds (11290) | |||||||||
| Transcription_factor | WBTranscriptionFactor000003 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00051792 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034860 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022781 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061867 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022780 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (15) | |||||||||
| Drives_construct (12) | |||||||||
| Construct_product (14) | |||||||||
| Antibody | WBAntibody00002078 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction (168) | |||||||||
| Map_info | Map | IV | Position | 1.25427 | Error | 0.010263 | |||
| Positive | Positive_clone | R11E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4038 | |||||||
| 4954 | |||||||||
| Pos_neg_data | 10661 | ||||||||
| Reference (55) | |||||||||
| Remark | Sequence connection from [Sundaram M]. krb 14/11/01 | ||||||||
| Positive_clone, Description and Alleles(cs28, cs40, cs44) data extracted from [Rocheleau CE, Howard RM, Goldman AP, Volk ML, Girard LJ,Sundaram MV] [ck1 020828] | |||||||||
| Method | Gene |
