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WormBase Tree Display for Gene: WBGene00001245

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Name Class

WBGene00001245SMapS_parentSequenceF56H11
IdentityVersion1
NameCGC_nameelo-7Person_evidenceWBPerson79
Sequence_nameF56H11.3
Molecular_nameF56H11.3
F56H11.3.1
CE35559
Other_nameCELE_F56H11.3Accession_evidenceNDBBX284604
Public_nameelo-7
DB_infoDatabaseAceViewgene4K293
WormQTLgeneWBGene00001245
WormFluxgeneWBGene00001245
NDBlocus_tagCELE_F56H11.3
PanthergeneCAEEL|EnsemblGenome=WBGene00001245|UniProtKB=Q20904
familyPTHR11157
NCBIgene186426
RefSeqproteinNM_001268468.2
TrEMBLUniProtAccQ20904
UniProt_GCRPUniProtAccQ20904
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:23WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classelo
Allele (23)
RNASeq_FPKM (74)
GO_annotation (20)
OrthologWBGene00039126Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00151065Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00136020Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00070278Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00095383Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00113484Pristionchus pacificusFrom_analysisOMA
WBGene00162349Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00139292Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00194449Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00146508Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00183545Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00127035Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00179164Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00211705Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00075163Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00068686Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00054467Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00055121Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00138707Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00120066Caenorhabditis japonicaFrom_analysisTreeFam
CSP26.g18388Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g21147Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g8107Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g19005Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14691Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g847Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g3200Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g2906Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00311.g9012Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-elo-7Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold610.g5846Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00668.g14220Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_10049Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013461Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_40342100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11343Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00091888Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00109627Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00112757Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00274652Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278862Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00279617Pristionchus pacificusFrom_analysisWormBase-Compara
SGD:S000004364Saccharomyces cerevisiaeFrom_analysisInparanoid
OrthoFinder
OrthoInspector
SonicParanoid
SGD:S000003732Saccharomyces cerevisiaeFrom_analysisInparanoid
OrthoFinder
OrthoInspector
SonicParanoid
ParalogWBGene00001239Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001240Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001241Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001242Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001243Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001244Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001247Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001246Caenorhabditis elegansFrom_analysisTreeFam
Panther
Structured_descriptionConcise_descriptionThe elo-7 gene encodes a paralog of elo-1 and elo-2, each of which encodes a polyunsaturated fatty acid (PUFA) elongase; ELO-7 has no known function in vivo.Paper_evidenceWBPaper00004162
WBPaper00005728
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable fatty acid elongase activity. Predicted to be involved in fatty acid biosynthetic process and sphingolipid biosynthetic process. Predicted to be located in membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF56H11.3
Corresponding_CDS_historyF56H11.3:wp109
F56H11.3b:wp246
Corresponding_transcriptF56H11.3.1
Other_sequenceOVC02819_1
BF154352.1
CJC03150_1
Experimental_infoRNAi_resultWBRNAi00048775Inferred_automaticallyRNAi_primary
WBRNAi00114844Inferred_automaticallyRNAi_primary
WBRNAi00102639Inferred_automaticallyRNAi_primary
WBRNAi00022963Inferred_automaticallyRNAi_primary
WBRNAi00015850Inferred_automaticallyRNAi_primary
WBRNAi00095254Inferred_automaticallyRNAi_primary
WBRNAi00114850Inferred_automaticallyRNAi_primary
WBRNAi00032986Inferred_automaticallyRNAi_primary
Expr_patternExpr1014339
Expr1152524
Expr2011284
Expr2029520
Drives_constructWBCnstr00037014
Construct_productWBCnstr00037014
Microarray_results (20)
Expression_cluster (136)
Interaction (145)
Map_infoMapIVPosition4.29744Error0.002574
PositivePositive_cloneF56H11Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00024532
WBPaper00029292
WBPaper00038491
WBPaper00042257
WBPaper00055090
WBPaper00064105
WBPaper00065988
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene