WormBase Tree Display for Gene: WBGene00001240
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WBGene00001240 | SMap | S_parent | Sequence | F11E6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | elo-2 | Person_evidence | WBPerson79 | |||||
Sequence_name | F11E6.5 | ||||||||
Molecular_name | F11E6.5 | ||||||||
F11E6.5.1 | |||||||||
CE19785 | |||||||||
Other_name | CELE_F11E6.5 | Accession_evidence | NDB | BX284604 | |||||
Public_name | elo-2 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | elo | ||||||||
Allele (25) | |||||||||
Strain | WBStrain00049341 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (21) | |||||||||
Ortholog (55) | |||||||||
Paralog | WBGene00001239 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00001247 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001242 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001245 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001244 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001243 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001246 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00001241 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | elo-2 encodes a palmitic acid elongase, homologous to polyunsaturated fatty acid (PUFA) elongases such as ELO-1, that is required for normally rapid growth, normally large body size, fertility, and for the quantitative regulation of the ultradian defecation rhythm; the joint action of ELO-2 with ELO-1 is strongly required for 20-carbon PUFA production and for general viability; loss of el-2 activity via RNAi also results in decreased intestinal dipeptide transport and increased fat droplet size; elo-2 is most strongly expressed in intestinal cells, as well as other tissues such as the ventral nerve cord, pharyngeal muscles, uterus, and tail. | Paper_evidence | WBPaper00004162 | |||||
WBPaper00005654 | |||||||||
WBPaper00005728 | |||||||||
WBPaper00040287 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable fatty acid elongase activity. Involved in several processes, including determination of adult lifespan; lipid metabolic process; and regulation of gene expression. Predicted to be located in membrane. Expressed in intestine; pharyngeal muscle cell; tail; uterus; and ventral nerve cord. Is an ortholog of human ELOVL3 (ELOVL fatty acid elongase 3) and ELOVL6 (ELOVL fatty acid elongase 6). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F11E6.5 | |||||||
Corresponding_transcript | F11E6.5.1 | ||||||||
Other_sequence (67) | |||||||||
Associated_feature | WBsf652427 | ||||||||
WBsf655542 | |||||||||
WBsf978977 | |||||||||
WBsf999043 | |||||||||
Experimental_info | RNAi_result (30) | ||||||||
Expr_pattern | Expr2433 | ||||||||
Expr1028402 | |||||||||
Expr1030786 | |||||||||
Expr1148341 | |||||||||
Expr2011279 | |||||||||
Expr2029515 | |||||||||
Drives_construct | WBCnstr00010825 | ||||||||
WBCnstr00015807 | |||||||||
WBCnstr00015808 | |||||||||
WBCnstr00037019 | |||||||||
Construct_product | WBCnstr00010825 | ||||||||
WBCnstr00037019 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (228) | |||||||||
Interaction (41) | |||||||||
Map_info | Map | IV | Position | 17.1016 | Error | 0.029226 | |||
Positive | Positive_clone | F11E6 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4901 | |||||||
4433 | |||||||||
4778 | |||||||||
Pseudo_map_position | |||||||||
Reference (31) | |||||||||
Picture | WBPicture0000013096 | ||||||||
Remark | elo-2 was previously incorrectly connected to C40H1.4 [021023 ck1] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |