WormBase Tree Display for Gene: WBGene00001169
expand all nodes | collapse all nodes | view schema
| WBGene00001169 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | eef-1A.2 | Person_evidence | WBPerson1787 | |||||
| WBPerson10190 | |||||||||
| Sequence_name | R03G5.1 | ||||||||
| Molecular_name | R03G5.1 | ||||||||
| R03G5.1.1 | |||||||||
| CE01270 | |||||||||
| R03G5.1.2 | |||||||||
| R03G5.1.3 | |||||||||
| Other_name | eln-2 | ||||||||
| eft-4 | |||||||||
| C54D2.a | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| R03G5.a | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| R03G5.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_R03G5.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | eef-1A.2 | ||||||||
| DB_info | Database | AceView | gene | XI443 | |||||
| WormQTL | gene | WBGene00001169 | |||||||
| WormFlux | gene | WBGene00001169 | |||||||
| NDB | locus_tag | CELE_R03G5.1 | |||||||
| NCBI | gene | 181044 | |||||||
| RefSeq | protein | NM_076922.5 | |||||||
| SwissProt | UniProtAcc | P53013 | |||||||
| UniProt_GCRP | UniProtAcc | P53013 | |||||||
| OMIM | gene | 602959 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 03 Aug 2010 09:32:43 | WBPerson2970 | Name_change | CGC_name | eef-1A-2 | ||||
| Other_name | eft-4 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | eef | ||||||||
| Allele (48) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes EF1 alpha protein, aa sequence identical to eft-3. [FK] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00108369 | ||||||||
| 00108370 | |||||||||
| 00108371 | |||||||||
| 00108372 | |||||||||
| Ortholog (50) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | eef-1A.2 encodes a translation elongation factor 1-alpha homolog that is required for embryonic viability, fertility, and a normal postembryonic growth rate; eef-1A.2 encodes at least one alternatively spliced coding sequence identical to that of eef-1A.1. | Paper_evidence | WBPaper00004313 | |||||
| WBPaper00004540 | |||||||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 03 Dec 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable GTP binding activity; GTPase activity; and translation elongation factor activity. Predicted to be involved in translational elongation. Human ortholog(s) of this gene implicated in Alzheimer's disease; autosomal dominant intellectual developmental disorder 38; developmental and epileptic encephalopathy 33; and ovarian cancer. Is an ortholog of human EEF1A1 (eukaryotic translation elongation factor 1 alpha 1); EEF1A1P5 (eukaryotic translation elongation factor 1 alpha 1 pseudogene 5); and EEF1A2 (eukaryotic translation elongation factor 1 alpha 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3192) | ||||
| DOID:0070068 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3192) | ||||||
| DOID:0080463 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3192) | ||||||
| DOID:2394 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3192) | ||||||
| Molecular_info | Corresponding_CDS | R03G5.1 | |||||||
| Corresponding_CDS_history | R03G5.1b:wp272 | ||||||||
| R03G5.1c:wp272 | |||||||||
| R03G5.1d:wp162 | |||||||||
| R03G5.1d:wp272 | |||||||||
| Corresponding_transcript | R03G5.1.1 | ||||||||
| R03G5.1.2 | |||||||||
| R03G5.1.3 | |||||||||
| Other_sequence (769) | |||||||||
| Associated_feature (21) | |||||||||
| Experimental_info | RNAi_result (30) | ||||||||
| Expr_pattern | Expr1030746 | ||||||||
| Expr1154893 | |||||||||
| Expr2011178 | |||||||||
| Expr2029414 | |||||||||
| Drives_construct (11) | |||||||||
| Construct_product | WBCnstr00037980 | ||||||||
| Microarray_results (34) | |||||||||
| Expression_cluster (226) | |||||||||
| Interaction (307) | |||||||||
| Map_info | Map | X | Position | -1.12456 | |||||
| Positive | Positive_clone | R03G5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| YO#EFG5 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024924 | ||||||||
| WBPaper00025088 | |||||||||
| WBPaper00027281 | |||||||||
| WBPaper00037777 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065634 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
