WormBase Tree Display for Gene: WBGene00001162
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| WBGene00001162 | Evidence | Accession_evidence | EMBL | AY028167 | |||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y48C3A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | efl-2 | Person_evidence | WBPerson268 | |||||
| Sequence_name | Y48C3A.17 | ||||||||
| Molecular_name | Y48C3A.17b | ||||||||
| Y48C3A.17b.1 | |||||||||
| CE41054 | |||||||||
| Y48C3A.17d | |||||||||
| CE41056 | |||||||||
| Y48C3A.17d.1 | |||||||||
| Other_name | CELE_Y48C3A.17 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | efl-2 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00001162 | |||||
| WormFlux | gene | WBGene00001162 | |||||||
| NDB | locus_tag | CELE_Y48C3A.17 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001162|UniProtKB=Q9U289 | |||||||
| family | PTHR12081 | ||||||||
| NCBI | gene | 174980 | |||||||
| RefSeq | protein | NM_001129186.3 | |||||||
| NM_001129188.4 | |||||||||
| SwissProt | UniProtAcc | A5HWA8 | |||||||
| UniProt_GCRP | UniProtAcc | A5HWA8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | efl | ||||||||
| Allele (327) | |||||||||
| Strain | WBStrain00055628 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP2606 | ||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00001161 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009899 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | The efl-2 gene encodes an E2F/DP1-like protein of as yet unknown function; comparative genomic analysis suggests that EFL-2 may be involved in apoptosis. | Paper_evidence | WBPaper00004589 | |||||
| WBPaper00005298 | |||||||||
| WBPaper00005708 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Expressed in dorsal nerve cord; head muscle; intestine; spermatheca; and ventral nerve cord. Is an ortholog of human E2F6 (E2F transcription factor 6). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48C3A.17b | |||||||
| Y48C3A.17d | |||||||||
| Corresponding_CDS_history | Y48C3A.17a:wp274 | ||||||||
| Y48C3A.17c:wp274 | |||||||||
| Corresponding_transcript | Y48C3A.17b.1 | ||||||||
| Y48C3A.17d.1 | |||||||||
| Other_sequence (834) | |||||||||
| Associated_feature | WBsf978877 | ||||||||
| WBsf990419 | |||||||||
| WBsf1013634 | |||||||||
| WBsf222359 | |||||||||
| WBsf222360 | |||||||||
| WBsf222361 | |||||||||
| WBsf222362 | |||||||||
| Transcription_factor | WBTranscriptionFactor000354 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00086552 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056897 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076035 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037241 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076037 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086553 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076034 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7721 | ||||||||
| Expr1014500 | |||||||||
| Expr1030740 | |||||||||
| Expr1160346 | |||||||||
| Expr2011190 | |||||||||
| Expr2029426 | |||||||||
| Drives_construct | WBCnstr00012866 | ||||||||
| Construct_product | WBCnstr00017975 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (59) | |||||||||
| Interaction (19) | |||||||||
| Map_info | Map | II | Position | 16.8192 | Error | 0.061631 | |||
| Positive | Positive_clone | Y48C3A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Picture | WBPicture0000013091 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
