WormBase Tree Display for Gene: WBGene00000563
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| WBGene00000563 | SMap | S_parent | Sequence | F38E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cng-3 | Person_evidence | WBPerson746 | |||||
| Sequence_name | F38E11.12 | ||||||||
| Molecular_name | F38E11.12 | ||||||||
| F38E11.12.1 | |||||||||
| CE37910 | |||||||||
| Other_name | CELE_F38E11.12 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cng-3 | ||||||||
| DB_info | Database | AceView | gene | 4K242 | |||||
| WormQTL | gene | WBGene00000563 | |||||||
| WormFlux | gene | WBGene00000563 | |||||||
| NDB | locus_tag | CELE_F38E11.12 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000563|UniProtKB=Q7Z205 | |||||||
| family | PTHR45638 | ||||||||
| NCBI | gene | 3565463 | |||||||
| RefSeq | protein | NM_001028023.4 | |||||||
| TREEFAM | TREEFAM_ID | TF319048 | |||||||
| TrEMBL | UniProtAcc | Q7Z205 | |||||||
| UniProt_GCRP | UniProtAcc | Q7Z205 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cng | ||||||||
| Allele (39) | |||||||||
| Strain | WBStrain00023531 | ||||||||
| WBStrain00023535 | |||||||||
| WBStrain00023536 | |||||||||
| WBStrain00023537 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00000487 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000562 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006526 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006525 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022295 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001171 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006830 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Involved in multicellular organismal reproductive process; positive regulation of growth rate; and response to heat. Located in non-motile cilium. Expressed in amphid neurons. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F38E11.12 | |||||||
| Corresponding_CDS_history | F38E11.12:wp137 | ||||||||
| Corresponding_transcript | F38E11.12.1 | ||||||||
| Associated_feature | WBsf652065 | ||||||||
| WBsf668161 | |||||||||
| WBsf668162 | |||||||||
| WBsf668163 | |||||||||
| WBsf668164 | |||||||||
| WBsf997427 | |||||||||
| WBsf997428 | |||||||||
| WBsf1017969 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014572 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00001776 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046722 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3305 | ||||||||
| Expr11201 | |||||||||
| Expr13329 | |||||||||
| Expr15331 | |||||||||
| Expr1024226 | |||||||||
| Expr1150596 | |||||||||
| Expr2010274 | |||||||||
| Expr2028516 | |||||||||
| Drives_construct | WBCnstr00011302 | ||||||||
| WBCnstr00018217 | |||||||||
| WBCnstr00037449 | |||||||||
| WBCnstr00039204 | |||||||||
| Construct_product | WBCnstr00011302 | ||||||||
| WBCnstr00037449 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (63) | |||||||||
| Interaction | WBInteraction000004650 | ||||||||
| WBInteraction000501267 | |||||||||
| WBInteraction000501269 | |||||||||
| WBInteraction000520473 | |||||||||
| WBInteraction000561583 | |||||||||
| WBInteraction000561584 | |||||||||
| Map_info | Map | IV | Position | 4.27875 | Error | 0.001159 | |||
| Positive | Positive_clone | F38E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5122 | |||||||
| 4280 | |||||||||
| 4417 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (22) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
