WormBase Tree Display for Gene: WBGene00000563
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WBGene00000563 | SMap | S_parent | Sequence | F38E11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | cng-3 | Person_evidence | WBPerson746 | |||||
Sequence_name | F38E11.12 | ||||||||
Molecular_name (3) | |||||||||
Other_name | CELE_F38E11.12 | Accession_evidence | NDB | BX284604 | |||||
Public_name | cng-3 | ||||||||
DB_info | Database | AceView | gene | 4K242 | |||||
WormQTL | gene | WBGene00000563 | |||||||
WormFlux | gene | WBGene00000563 | |||||||
NDB | locus_tag | CELE_F38E11.12 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000563|UniProtKB=Q7Z205 | |||||||
family | PTHR45638 | ||||||||
NCBI | gene | 3565463 | |||||||
RefSeq | protein | NM_001028023.4 | |||||||
TREEFAM | TREEFAM_ID | TF319048 | |||||||
TrEMBL | UniProtAcc | Q7Z205 | |||||||
UniProt_GCRP | UniProtAcc | Q7Z205 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cng | ||||||||
Allele (39) | |||||||||
Strain | WBStrain00023531 | ||||||||
WBStrain00023535 | |||||||||
WBStrain00023536 | |||||||||
WBStrain00023537 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (19) | |||||||||
Ortholog (31) | |||||||||
Paralog | WBGene00000487 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000562 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00006526 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006525 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00022295 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00001171 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00006830 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Involved in multicellular organismal reproductive process; positive regulation of growth rate; and response to heat. Located in non-motile cilium. Expressed in amphid neurons. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F38E11.12 | |||||||
Corresponding_CDS_history | F38E11.12:wp137 | ||||||||
Corresponding_transcript | F38E11.12.1 | ||||||||
Associated_feature | WBsf652065 | ||||||||
WBsf668161 | |||||||||
WBsf668162 | |||||||||
WBsf668163 | |||||||||
WBsf668164 | |||||||||
WBsf997427 | |||||||||
WBsf997428 | |||||||||
WBsf1017969 | |||||||||
Experimental_info | RNAi_result | WBRNAi00014572 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00001776 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00046722 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr3305 | ||||||||
Expr11201 | |||||||||
Expr13329 | |||||||||
Expr15331 | |||||||||
Expr1024226 | |||||||||
Expr1150596 | |||||||||
Expr2010274 | |||||||||
Expr2028516 | |||||||||
Drives_construct | WBCnstr00011302 | ||||||||
WBCnstr00018217 | |||||||||
WBCnstr00037449 | |||||||||
WBCnstr00039204 | |||||||||
Construct_product | WBCnstr00011302 | ||||||||
WBCnstr00037449 | |||||||||
Microarray_results (17) | |||||||||
Expression_cluster (63) | |||||||||
Interaction | WBInteraction000004650 | ||||||||
WBInteraction000501267 | |||||||||
WBInteraction000501269 | |||||||||
WBInteraction000520473 | |||||||||
WBInteraction000561583 | |||||||||
WBInteraction000561584 | |||||||||
Map_info | Map | IV | Position | 4.27875 | Error | 0.001159 | |||
Positive | Positive_clone | F38E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5122 | |||||||
4280 | |||||||||
4417 | |||||||||
Pseudo_map_position | |||||||||
Reference (22) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |