WormBase Tree Display for Gene: WBGene00022295
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WBGene00022295 | SMap | S_parent | Sequence | Y76B12C | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | cng-2 | Person_evidence | WBPerson260 | |||||
Sequence_name | Y76B12C.1 | ||||||||
Molecular_name | Y76B12C.1a | ||||||||
Y76B12C.1a.1 | |||||||||
CE52106 | |||||||||
Y76B12C.1b | |||||||||
CE49080 | |||||||||
Y76B12C.1b.1 | |||||||||
Other_name | CELE_Y76B12C.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | cng-2 | ||||||||
DB_info | Database | AceView | gene | 4C805 | |||||
WormQTL | gene | WBGene00022295 | |||||||
WormFlux | gene | WBGene00022295 | |||||||
NDB | locus_tag | CELE_Y76B12C.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00022295|UniProtKB=Q9N4C1 | |||||||
family | PTHR45638 | ||||||||
NCBI | gene | 190732 | |||||||
RefSeq | protein | NM_001307651.3 | |||||||
NM_001356909.3 | |||||||||
TrEMBL | UniProtAcc | U4PCB8 | |||||||
Q9N4C1 | |||||||||
UniProt_GCRP | UniProtAcc | Q9N4C1 | |||||||
OMIM | gene | 123825 | |||||||
600053 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Jul 2011 12:05:49 | WBPerson2970 | Name_change | CGC_name | cng-2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cng | ||||||||
Allele (143) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (16) | |||||||||
Ortholog (40) | |||||||||
Paralog | WBGene00000487 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000562 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00000563 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006525 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00006526 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00001171 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00006830 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to be involved in monoatomic cation transmembrane transport. Located in neuronal cell body. Expressed in amphid neurons. Human ortholog(s) of this gene implicated in achromatopsia 2 and retinitis pigmentosa 49. Is an ortholog of several human genes including CNGA1 (cyclic nucleotide gated channel subunit alpha 1); CNGA2 (cyclic nucleotide gated channel subunit alpha 2); and CNGA3 (cyclic nucleotide gated channel subunit alpha 3). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:13399 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2150) | ||||
DOID:0110377 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2148) | ||||||
DOID:0110007 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2150) | ||||||
DOID:10584 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2148) | ||||||
Molecular_info | Corresponding_CDS | Y76B12C.1a | |||||||
Y76B12C.1b | |||||||||
Corresponding_CDS_history | Y76B12C.1a:wp261 | ||||||||
Corresponding_transcript | Y76B12C.1a.1 | ||||||||
Y76B12C.1b.1 | |||||||||
Other_sequence | Oden_isotig20243 | ||||||||
Dviv_isotig18139 | |||||||||
Acan_isotig16606 | |||||||||
Acan_isotig17526 | |||||||||
Oden_isotig16694 | |||||||||
Oden_isotig16695 | |||||||||
Associated_feature | WBsf645830 | ||||||||
WBsf659961 | |||||||||
WBsf995610 | |||||||||
WBsf1016846 | |||||||||
Experimental_info | RNAi_result | WBRNAi00037865 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00021477 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00058495 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00021478 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr11200 | ||||||||
Expr1014127 | |||||||||
Expr1161904 | |||||||||
Expr2010273 | |||||||||
Expr2028515 | |||||||||
Drives_construct | WBCnstr00018216 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (89) | |||||||||
Map_info | Map | IV | Position | -11.729 | Error | 0.144001 | |||
Positive | Positive_clone | Y76B12C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00010384 | ||||||||
WBPaper00024571 | |||||||||
WBPaper00032769 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00043992 | |||||||||
WBPaper00060071 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |