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WormBase Tree Display for Gene: WBGene00000560

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Name Class

WBGene00000560EvidencePerson_evidenceWBPerson168
SMapS_parentSequenceY46E12A
IdentityVersion1
NameCGC_namecnc-6Person_evidenceWBPerson168
Sequence_nameY46E12A.1
Molecular_nameY46E12A.1
Y46E12A.1.1
CE26996
Other_nameY46E12A.dCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y46E12A.1Accession_evidenceNDBBX284603
Public_namecnc-6
DB_infoDatabaseAceViewgene3C853
WormQTLgeneWBGene00000560
WormFluxgeneWBGene00000560
NDBlocus_tagCELE_Y46E12A.1
PanthergeneCAEEL|WormBase=WBGene00000560|UniProtKB=Q9N3V6
familyPTHR36521
NCBIgene175324
RefSeqproteinNM_065054.4
TrEMBLUniProtAccQ9N3V6
UniProt_GCRPUniProtAccQ9N3V6
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcnc
Allele (62)
RNASeq_FPKM (74)
GO_annotation00094059
00106070
00106071
OrthologWBGene00035459Caenorhabditis briggsaeFrom_analysisOMA
WBGene00061996Caenorhabditis remaneiFrom_analysisOMA
WBGene00141653Caenorhabditis brenneriFrom_analysisOMA
chrIII_pilon.g7007Caenorhabditis elegansFrom_analysisWormBase-Compara
ParalogWBGene00007989Caenorhabditis elegansFrom_analysisPanther
WBGene00007990Caenorhabditis elegansFrom_analysisPanther
WBGene00014698Caenorhabditis elegansFrom_analysisPanther
WBGene00014699Caenorhabditis elegansFrom_analysisPanther
WBGene00045211Caenorhabditis elegansFrom_analysisPanther
WBGene00194727Caenorhabditis elegansFrom_analysisPanther
WBGene00007992Caenorhabditis elegansFrom_analysisPanther
WBGene00007682Caenorhabditis elegansFrom_analysisPanther
WBGene00014700Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptioncnc-6 encodes one of eleven C. elegans caenacin peptides; cnc-6 expression is strongly induced after infection by the fungus Drechmeria coniospora, suggesting that it functions as a secreted antimicrobial peptide in the innate immune response.Paper_evidenceWBPaper00006488
Curator_confirmedWBPerson1843
Date_last_updated04 Jan 2010 00:00:00
Automated_descriptionInvolved in defense response to fungus and innate immune response. Expressed in intestine.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY46E12A.1
Corresponding_transcriptY46E12A.1.1
Other_sequenceNAC00286_2
MAC02348_1
BG467467.1
BU666480.1
BG467533.1
BU666521.1
CBC14285_1
Associated_featureWBsf644961
WBsf224469
Experimental_infoRNAi_resultWBRNAi00037124Inferred_automaticallyRNAi_primary
WBRNAi00020019Inferred_automaticallyRNAi_primary
WBRNAi00056659Inferred_automaticallyRNAi_primary
Expr_patternExpr8218
Expr1018503
Expr1160129
Expr2010266
Expr2028508
Microarray_results (19)
Expression_clusterWBPaper00032031:DConiospora_upregulated_cDNA_12h
WBPaper00032031:DConiospora_upregulated_cDNA_24h
WBPaper00032031:DConiospora_upregulated_OligoArray_24h
WBPaper00032528:L3_depleted
WBPaper00033065:isp-1-1(qm150)_upregulated
WBPaper00033131:dapk-1_upregulated
WBPaper00037849:sam-10(js94)_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_adult_enriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:dopaminergic-neurons_larva_enriched
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_downregulated_TilingArray
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00040560:hpl-2_L3_downregulated
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00044316:HgCl2_20uM_upregulated
WBPaper00044426:rotenone_5day_downregulated
WBPaper00045774:clk-1_downregulated
WBPaper00048971:daf-16(mgDf50)_upregulated_L1
WBPaper00049484:elt-2(RNAi)_downregulated_L1
WBPaper00049736:daf-2(e1370)_downregulated_15deg-then-25deg(12hr)
WBPaper00050193:cec-4(ok3124)_upregulated_L1
WBPaper00050193:dpy-27(RNAi)_upregulated_L1
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050448:KGB-1-induced
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
WBPaper00050561:indole_10-fold_upregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050743:elli-1(sam-3)_downregulated
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00051437:Cit-SPIONs_downregulated
WBPaper00051558:aging_regulated
WBPaper00053140:IncreasingResponse_20nmAgCit
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053308:NMD(-)_downregulated_SMD-2_non-binding_ClassIV
WBPaper00053318:Aging_upregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_upregulated_mRNA
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053771:up_at_24h-NaCl
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053888:drh-3(rrr2)_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00054796:cav-1(RNAi)_downregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055386:eat-2(ad465)_downregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055944:C.butyricum_vs_OP50_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056284:ints-11(RNAi)_upregulated
WBPaper00056586:kri-1(ok1251);mpk-2(ok219)_downregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00059231:alh-6(lax105)_D3Adult_downregulated
WBPaper00059421:daf-1(m40)_upregulated
WBPaper00059537:ngn-1(ok2200)_upregulated
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060445:ikb-1(nr2027)_upregulated_L1
WBPaper00060661:sensory-neuron_depleted
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
WBPaper00061081:skpo-1(ok1640)_upregulated_OP50
WBPaper00061274:hypergravity_10xg_downregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061274:microgravity_downregulated
WBPaper00061340:Hypodermis
WBPaper00061340:OLL
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061424:Diet_MYb131_upregulated
WBPaper00061527:fipr-23-fipr-24
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061590:CGP37157_downregulated
WBPaper00061699:daf-18(ok480)_downregulated
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062354:H.zoospora_12h_regulated
WBPaper00062587:lsl-1(ljm1)_upregulated
WBPaper00062587:lsl-1(tm4769)_upregulated
WBPaper00062590:Aging_upregulated_hypodermis
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00065005:sams-3(RNAi)_upregulated
WBPaper00065029:cadmium_upregulated
WBPaper00065043:dcap-1(tm3163)_upregulated
WBPaper00065158:25C_vs_15C_upregulated_AFD
WBPaper00065158:25C_vs_15C_upregulated_WholeAnimal
WBPaper00065225:nhr-42(tm1375)_upregulated_uninfected
WBPaper00065315:mating_upregulated_Day2-7
WBPaper00065749:Heat-Shock_downregulated_N2
WBPaper00065841:2_0
WBPaper00065841:33_0
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_downregulated_WT
cgc4489_group_9
WBPaper00028789:PA14_vs_OP50_upregulated_8hr
WBPaper00029437:dcr-1_upregulated
WBPaper00032948:FedUp
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035227:heat_shock_regulated
WBPaper00035424:ASER_up
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-8_regulated
WBPaper00036286:Pattern_F
WBPaper00036383:ash-2_Day8_regulated
WBPaper00040963:Q100_up
WBPaper00040963:Q200_up
WBPaper00041002:HF_11d_0.2mM_Down
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041609:hpl-1_hpl-2_downregulated
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00044091:Bpseudomallei_induced_4h
WBPaper00044091:Bpseudomallei_induced_8h
WBPaper00044091:Bpseudomallei_induced_12h
WBPaper00044535:male_upregulated
WBPaper00045374:Benzene_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:N2_allantoin_downregulated
WBPaper00049311:AgNO3_regulated
WBPaper00049311:sAg-MNP_regulated
WBPaper00050520:lagr-1(gk327);hyl-1(ok976)_upregulated
WBPaper00053827:pyoverdine_upregulated
WBPaper00055899:nitroguanidine_regulated
Map_infoMapIIIPosition-18.0035Error0.460795
PositivePositive_cloneY46E12AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00006437
WBPaper00006488
WBPaper00032031
WBPaper00060703
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene