WormBase Tree Display for Gene: WBGene00000466
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| WBGene00000466 | SMap | S_parent | Sequence | C03D6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cel-1 | |||||||
| Sequence_name | C03D6.3 | ||||||||
| Molecular_name | C03D6.3a | ||||||||
| C03D6.3a.1 | |||||||||
| CE32300 | |||||||||
| C03D6.3b | |||||||||
| CE05197 | |||||||||
| C03D6.3b.1 | |||||||||
| Other_name | CELE_C03D6.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | cel-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cel | ||||||||
| Allele (51) | |||||||||
| Legacy_information | [Moore CR] cel for Capping Enzyme famiLy. No mutants known. Encodes predicted capping enzyme, N-term domain has RNA triphosphatase activity, no detectable PTP activity. | ||||||||
| Strain | WBStrain00002815 | ||||||||
| WBStrain00035951 | |||||||||
| WBStrain00036195 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (36) | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00011967 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00010037 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | cel-1 encodes a mRNA capping enzyme, with a N-terminal region with RNA triphosphatase activity and a C-terminal region containing motifs found in yeast and vaccinia virus capping enzyme guanylytransferases; cel-1 is required for embryonic viability, body morphology, and vulval development. | Paper_evidence | WBPaper00002809 | |||||
| WBPaper00004402 | |||||||||
| WBPaper00004540 | |||||||||
| WBPaper00005844 | |||||||||
| WBPaper00005845 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables polynucleotide 5'-phosphatase activity. Involved in polynucleotide 5' dephosphorylation and positive regulation of gene expression. Located in nucleus. Expressed in tail. Is an ortholog of human RNGTT (RNA guanylyltransferase and 5'-phosphatase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C03D6.3a | |||||||
| C03D6.3b | |||||||||
| Corresponding_CDS_history | C03D6.3:wp90 | ||||||||
| Corresponding_transcript | C03D6.3a.1 | ||||||||
| C03D6.3b.1 | |||||||||
| Other_sequence (42) | |||||||||
| Associated_feature | WBsf643605 | ||||||||
| WBsf656780 | |||||||||
| WBsf984772 | |||||||||
| WBsf218322 | |||||||||
| WBsf218323 | |||||||||
| Experimental_info | RNAi_result (26) | ||||||||
| Expr_pattern | Chronogram1720 | ||||||||
| Chronogram1722 | |||||||||
| Expr5125 | |||||||||
| Expr5126 | |||||||||
| Expr1022220 | |||||||||
| Expr1030270 | |||||||||
| Expr1143619 | |||||||||
| Expr2009921 | |||||||||
| Expr2028161 | |||||||||
| Drives_construct | WBCnstr00003342 | ||||||||
| WBCnstr00003343 | |||||||||
| WBCnstr00037516 | |||||||||
| Construct_product | WBCnstr00037516 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (82) | |||||||||
| Interaction (61) | |||||||||
| Map_info | Map | I | Position | 3.85263 | Error | 0.002334 | |||
| Positive | Positive_clone | C03D6 | Author_evidence | Moore CR | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4781 | |||||||
| 5019 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | [JAH] This is NOT a tyrosine protein phosphatase | ||||||||
| Data extracted from Takagi et al. (1997) | |||||||||
| cel-1 has also been used as an unofficial name for exc-7 (WBGene00001368) | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
