WormBase Tree Display for Gene: WBGene00000466

WBGene00000466 SMap: S_parent: Sequence: C03D6
  Identity: Version: 1
    Name: CGC_name: cel-1
      Sequence_name: C03D6.3
      Molecular_name: C03D6.3a
        C03D6.3a.1
        CE32300
        C03D6.3b
        CE05197
        C03D6.3b.1
      Other_name: CELE_C03D6.3 Accession_evidence: NDB BX284601
      Public_name: cel-1
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:20 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cel
    Allele (51)
    Legacy_information: [Moore CR] cel for Capping Enzyme famiLy. No mutants known. Encodes predicted capping enzyme, N-term domain has RNA triphosphatase activity, no detectable PTP activity.
    Strain: WBStrain00002815
      WBStrain00035951
      WBStrain00036195
    RNASeq_FPKM (74)
    GO_annotation (36)
    Ortholog: WBGene00026504 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00026554 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00144768 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00141210 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00079826 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00136421 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00222193 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12313 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3398 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g3399 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g3657 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g7759 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g13493 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g589 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g591 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8030 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g11539 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g24196 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g607 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00241.g7692 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-cel-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14659 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00443.g11457 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11636 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000563 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05153 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08230 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g1561 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g20274 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10060100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1877 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243141 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00103484 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258051 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00301208 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301275 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003098 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoInspector
            Panther
      FB:FBgn0030556 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-2087 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10073 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1329041 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1311410 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00011967 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00010037 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: cel-1 encodes a mRNA capping enzyme, with a N-terminal region with RNA triphosphatase activity and a C-terminal region containing motifs found in yeast and vaccinia virus capping enzyme guanylytransferases; cel-1 is required for embryonic viability, body morphology, and vulval development. Paper_evidence: WBPaper00002809
            WBPaper00004402
            WBPaper00004540
            WBPaper00005844
            WBPaper00005845
          Curator_confirmed: WBPerson48
            WBPerson324
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enables polynucleotide 5'-phosphatase activity. Involved in polynucleotide 5' dephosphorylation and positive regulation of gene expression. Located in nucleus. Expressed in tail. Is an ortholog of human RNGTT (RNA guanylyltransferase and 5'-phosphatase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C03D6.3a
      C03D6.3b
    Corresponding_CDS_history: C03D6.3:wp90
    Corresponding_transcript: C03D6.3a.1
      C03D6.3b.1
    Other_sequence (42)
    Associated_feature: WBsf643605
      WBsf656780
      WBsf984772
      WBsf218322
      WBsf218323
  Experimental_info: RNAi_result (26)
    Expr_pattern: Chronogram1720
      Chronogram1722
      Expr5125
      Expr5126
      Expr1022220
      Expr1030270
      Expr1143619
      Expr2009921
      Expr2028161
    Drives_construct: WBCnstr00003342
      WBCnstr00003343
      WBCnstr00037516
    Construct_product: WBCnstr00037516
    Microarray_results (27)
    Expression_cluster (82)
    Interaction (61)
  Map_info: Map: I Position: 3.85263 Error: 0.002334
    Positive: Positive_clone: C03D6 Author_evidence: Moore CR
          Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4781
        5019
    Pseudo_map_position
  Reference (14)
  Remark: [JAH] This is NOT a tyrosine protein phosphatase
    Data extracted from Takagi et al. (1997)
    cel-1 has also been used as an unofficial name for exc-7 (WBGene00001368)
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene