WormBase Tree Display for Gene: WBGene00000466
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WBGene00000466 | SMap | S_parent | Sequence | C03D6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | cel-1 | |||||||
Sequence_name | C03D6.3 | ||||||||
Molecular_name | C03D6.3a | ||||||||
C03D6.3a.1 | |||||||||
CE32300 | |||||||||
C03D6.3b | |||||||||
CE05197 | |||||||||
C03D6.3b.1 | |||||||||
Other_name | CELE_C03D6.3 | Accession_evidence | NDB | BX284601 | |||||
Public_name | cel-1 | ||||||||
DB_info | Database | AceView | gene | 1K243 | |||||
WormQTL | gene | WBGene00000466 | |||||||
WormFlux | gene | WBGene00000466 | |||||||
NDB | locus_tag | CELE_C03D6.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000466|UniProtKB=Q17607 | |||||||
family | PTHR10367 | ||||||||
NCBI | gene | 172814 | |||||||
RefSeq | protein | NM_001025809.3 | |||||||
NM_001025808.6 | |||||||||
KEGG | KEGG_id | 3.6.1.74 | |||||||
NemaPath | KEGG_id | 3.6.1.74 | |||||||
SwissProt | UniProtAcc | Q17607 | |||||||
TREEFAM | TREEFAM_ID | TF314914 | |||||||
TrEMBL | UniProtAcc | Q6A3Q2 | |||||||
UniProt_GCRP | UniProtAcc | Q17607 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cel | ||||||||
Allele (51) | |||||||||
Legacy_information | [Moore CR] cel for Capping Enzyme famiLy. No mutants known. Encodes predicted capping enzyme, N-term domain has RNA triphosphatase activity, no detectable PTP activity. | ||||||||
Strain | WBStrain00002815 | ||||||||
WBStrain00035951 | |||||||||
WBStrain00036195 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (36) | |||||||||
Ortholog (42) | |||||||||
Paralog | WBGene00011967 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00010037 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | cel-1 encodes a mRNA capping enzyme, with a N-terminal region with RNA triphosphatase activity and a C-terminal region containing motifs found in yeast and vaccinia virus capping enzyme guanylytransferases; cel-1 is required for embryonic viability, body morphology, and vulval development. | Paper_evidence | WBPaper00002809 | |||||
WBPaper00004402 | |||||||||
WBPaper00004540 | |||||||||
WBPaper00005844 | |||||||||
WBPaper00005845 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
WBPerson324 | |||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables polynucleotide 5'-phosphatase activity. Involved in polynucleotide 5' dephosphorylation and positive regulation of gene expression. Located in nucleus. Expressed in tail. Is an ortholog of human RNGTT (RNA guanylyltransferase and 5'-phosphatase). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C03D6.3a | |||||||
C03D6.3b | |||||||||
Corresponding_CDS_history | C03D6.3:wp90 | ||||||||
Corresponding_transcript | C03D6.3a.1 | ||||||||
C03D6.3b.1 | |||||||||
Other_sequence (42) | |||||||||
Associated_feature | WBsf643605 | ||||||||
WBsf656780 | |||||||||
WBsf984772 | |||||||||
WBsf218322 | |||||||||
WBsf218323 | |||||||||
Experimental_info | RNAi_result (26) | ||||||||
Expr_pattern | Chronogram1720 | ||||||||
Chronogram1722 | |||||||||
Expr5125 | |||||||||
Expr5126 | |||||||||
Expr1022220 | |||||||||
Expr1030270 | |||||||||
Expr1143619 | |||||||||
Expr2009921 | |||||||||
Expr2028161 | |||||||||
Drives_construct | WBCnstr00003342 | ||||||||
WBCnstr00003343 | |||||||||
WBCnstr00037516 | |||||||||
Construct_product | WBCnstr00037516 | ||||||||
Microarray_results (27) | |||||||||
Expression_cluster (82) | |||||||||
Interaction (61) | |||||||||
Map_info | Map | I | Position | 3.85263 | Error | 0.002334 | |||
Positive | Positive_clone | C03D6 | Author_evidence | Moore CR | |||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
Mapping_data | Multi_point | 4781 | |||||||
5019 | |||||||||
Pseudo_map_position | |||||||||
Reference (14) | |||||||||
Remark | [JAH] This is NOT a tyrosine protein phosphatase | ||||||||
Data extracted from Takagi et al. (1997) | |||||||||
cel-1 has also been used as an unofficial name for exc-7 (WBGene00001368) | |||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |