WormBase Tree Display for Gene: WBGene00000392
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| WBGene00000392 | SMap | S_parent | Sequence | F49E8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cdd-2 | |||||||
| Sequence_name | F49E8.4 | ||||||||
| Molecular_name | F49E8.4 | ||||||||
| F49E8.4.1 | |||||||||
| CE10792 | |||||||||
| Other_name | CELE_F49E8.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cdd-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cdd | ||||||||
| Allele (17) | |||||||||
| Strain | WBStrain00031440 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (27) | |||||||||
| Contained_in_operon | CEOP4228 | ||||||||
| CEOP4618 | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00000391 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | A functional cytidine deaminase that affects morphology of embryos; it is expressed at all life cycle stages. | Paper_evidence | WBPaper00005385 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables RNA binding activity; cytidine deaminase activity; and deoxycytidine deaminase activity. Involved in RNA modification; embryo development; and pyrimidine nucleoside metabolic process. Predicted to be located in cytosol. Expressed in intestine. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma and stomach cancer. Is an ortholog of human CDA (cytidine deaminase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:3908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1712) | ||||
| DOID:10534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1712) | ||||||
| Molecular_info | Corresponding_CDS | F49E8.4 | |||||||
| Corresponding_transcript | F49E8.4.1 | ||||||||
| Other_sequence (55) | |||||||||
| Associated_feature | WBsf230292 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00062880 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00090631 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062881 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032552 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062878 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047871 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062879 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015333 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1914 | ||||||||
| Expr1916 | |||||||||
| Expr1021614 | |||||||||
| Expr1030214 | |||||||||
| Expr1151701 | |||||||||
| Expr2009794 | |||||||||
| Expr2028034 | |||||||||
| Drives_construct | WBCnstr00010517 | ||||||||
| WBCnstr00019844 | |||||||||
| WBCnstr00037574 | |||||||||
| Construct_product | WBCnstr00019844 | ||||||||
| WBCnstr00037574 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (124) | |||||||||
| Interaction (49) | |||||||||
| Map_info | Map | IV | Position | 3.34969 | Error | 0.001769 | |||
| Positive | Positive_clone | F49E8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4190 | |||||||
| 4563 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005385 | ||||||||
| WBPaper00024352 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049181 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059294 | |||||||||
| Remark | Sequence connection from [Thompson FJ, Britton C, Wheatley I, Devaney E], [020808 krb] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
