WormBase Tree Display for Gene: WBGene00000392

WBGene00000392 SMap: S_parent: Sequence: F49E8
  Identity: Version: 1
    Name: CGC_name: cdd-2
      Sequence_name: F49E8.4
      Molecular_name: F49E8.4
        F49E8.4.1
        CE10792
      Other_name: CELE_F49E8.4 Accession_evidence: NDB BX284604
      Public_name: cdd-2
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:20 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cdd
    Allele (17)
    Strain: WBStrain00031440
    RNASeq_FPKM (74)
    GO_annotation (27)
    Contained_in_operon: CEOP4228
      CEOP4618
    Ortholog: WBGene00071952 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00028264 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00128107 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00193558 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00191424 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00228855 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g13108 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g7852 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g18827 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17371 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g21755 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g9559 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15752 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g970 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g28921 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19449 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00136.g5337 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-cdd-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21201 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00440.g11418 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_013969 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g7804 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40301300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g10862 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00238671 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00249368 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00304445 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00266695 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000004235 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0032001 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0032002 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0032003 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040426-1911 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-041114-88 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-170609-2 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:1712 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1919519 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1311101 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog: WBGene00000391 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: A functional cytidine deaminase that affects morphology of embryos; it is expressed at all life cycle stages. Paper_evidence: WBPaper00005385
          Curator_confirmed: WBPerson324
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enables RNA binding activity; cytidine deaminase activity; and deoxycytidine deaminase activity. Involved in RNA modification; embryo development; and pyrimidine nucleoside metabolic process. Predicted to be located in cytosol. Expressed in intestine. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma and stomach cancer. Is an ortholog of human CDA (cytidine deaminase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:3908 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:1712)
      DOID:10534 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:1712)
  Molecular_info: Corresponding_CDS: F49E8.4
    Corresponding_transcript: F49E8.4.1
    Other_sequence (55)
    Associated_feature: WBsf230292
  Experimental_info: RNAi_result: WBRNAi00062880 Inferred_automatically: RNAi_primary
      WBRNAi00090631 Inferred_automatically: RNAi_primary
      WBRNAi00062881 Inferred_automatically: RNAi_primary
      WBRNAi00032552 Inferred_automatically: RNAi_primary
      WBRNAi00062878 Inferred_automatically: RNAi_primary
      WBRNAi00047871 Inferred_automatically: RNAi_primary
      WBRNAi00062879 Inferred_automatically: RNAi_primary
      WBRNAi00015333 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1914
      Expr1916
      Expr1021614
      Expr1030214
      Expr1151701
      Expr2009794
      Expr2028034
    Drives_construct: WBCnstr00010517
      WBCnstr00019844
      WBCnstr00037574
    Construct_product: WBCnstr00019844
      WBCnstr00037574
    Microarray_results (19)
    Expression_cluster (124)
    Interaction (49)
  Map_info: Map: IV Position: 3.34969 Error: 0.001769
    Positive: Positive_clone: F49E8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4190
        4563
    Pseudo_map_position
  Reference: WBPaper00005385
    WBPaper00024352
    WBPaper00038491
    WBPaper00049181
    WBPaper00055090
    WBPaper00059294
  Remark: Sequence connection from [Thompson FJ, Britton C, Wheatley I, Devaney E], [020808 krb]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene