WormBase Tree Display for Gene: WBGene00000391
expand all nodes | collapse all nodes | view schema
| WBGene00000391 | Evidence | Paper_evidence | WBPaper00005385 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| CGC_data_submission | |||||||||
| SMap | S_parent | Sequence | C47D2 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | cdd-1 | |||||||
| Sequence_name | C47D2.2 | ||||||||
| Molecular_name | C47D2.2 | ||||||||
| C47D2.2.1 | |||||||||
| CE06962 | |||||||||
| Other_name | tag-17 | CGC_data_submission | |||||||
| CELE_C47D2.2 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | cdd-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cdd | ||||||||
| Allele (52) | |||||||||
| Strain | WBStrain00035584 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (25) | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00000392 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | cdd-1 encodes a cytidine deaminase that contains a zinc-binding region; CDD-1 exhibits deoxycytidine deaminase activity when expressed in vitro, and is able to bind AU-rich RNA sequences in vitro; a cdd-1::lacZ reporter fusion is expressed at highest levels in early larvae and is seen predominantly in the intestine and pharynx. | Paper_evidence | WBPaper00005385 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 25 Feb 2009 00:00:00 | ||||||||
| Automated_description | Enables RNA binding activity and deoxycytidine deaminase activity. Involved in RNA modification; deoxycytidine catabolic process; and uridine biosynthetic process. Predicted to be located in cytosol. Expressed in intestine; pharynx; and tail. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma and stomach cancer. Is an ortholog of human CDA (cytidine deaminase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:3908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1712) | ||||
| DOID:10534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1712) | ||||||
| Molecular_info | Corresponding_CDS | C47D2.2 | |||||||
| Corresponding_transcript | C47D2.2.1 | ||||||||
| Other_sequence | Oden_isotig23431 | ||||||||
| CBC05752_1 | |||||||||
| GP02112 | |||||||||
| Associated_feature | WBsf654195 | ||||||||
| WBsf654196 | |||||||||
| WBsf669969 | |||||||||
| WBsf237657 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00062876 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00062880 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042671 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062881 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029906 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062877 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1913 | ||||||||
| Expr1915 | |||||||||
| Expr1011717 | |||||||||
| Expr1146658 | |||||||||
| Expr2009793 | |||||||||
| Expr2028033 | |||||||||
| Drives_construct | WBCnstr00010516 | ||||||||
| WBCnstr00015675 | |||||||||
| WBCnstr00037575 | |||||||||
| Construct_product | WBCnstr00010516 | ||||||||
| WBCnstr00037575 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (209) | |||||||||
| Interaction (32) | |||||||||
| Map_info | Map | X | Position | -0.350194 | Error | 0.033185 | |||
| Positive | Positive_clone | C47D2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4189 | |||||||
| 4468 | |||||||||
| 4876 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005385 | ||||||||
| WBPaper00024352 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048615 | |||||||||
| WBPaper00049181 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059294 | |||||||||
| Remark | Gene name created from parsing 'genotype' field from CGC strain information [krb 020721] | ||||||||
| Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
