WormBase Tree Display for Gene: WBGene00000381
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| WBGene00000381 | SMap | S_parent | Sequence | F01F1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cct-6 | Person_evidence | WBPerson89 | |||||
| Sequence_name | F01F1.8 | ||||||||
| Molecular_name | F01F1.8a | ||||||||
| F01F1.8a.1 | |||||||||
| CE01234 | |||||||||
| F01F1.8b | |||||||||
| CE30647 | |||||||||
| F01F1.8a.2 | |||||||||
| F01F1.8b.1 | |||||||||
| Other_name | CELE_F01F1.8 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | cct-6 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cct | ||||||||
| Allele (24) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes one of 7-9 related subunits of eukaryotic cytosolic chaperonin CCT.Ortholog of mouse Cctz (67% aa sequence identity)[PC] | ||||||||
| [C.elegansII] NMK. Encodes one of 7-9 related subunits of eukaryotic cytosolic chaperonin CCT. Ortholog of mouse Cctz (67% aa sequence identity)[PC] | |||||||||
| Strain | WBStrain00037224 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP3336 | ||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00000377 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000378 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000379 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000380 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020391 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021934 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018782 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00002025 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004089 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cct-6 encodes, by alternative splicing, two isoforms of a putative zeta subunit of the eukaryotic cytosolic ('T complex') chaperonin, orthologous to human CCT6A (OMIM:104613); CCT-6 represses SKN-1-dependent transcription of gst-4; CCT-6 is expressed in a few cells of pre-comma stage embryos; in mass RNAi assays, CCT-6 is required for normally short life span, and for normal transgene subcellular localization, embryonic and larval viability, fertility, vulval development, locomotion, and osmoregulation. | Paper_evidence (14) | ||||||
| Curator_confirmed | WBPerson567 | ||||||||
| WBPerson480 | |||||||||
| Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be located in cytoplasm. Predicted to be part of chaperonin-containing T-complex. Is an ortholog of human CCT6B (chaperonin containing TCP1 subunit 6B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F01F1.8a | |||||||
| F01F1.8b | |||||||||
| Corresponding_transcript | F01F1.8a.1 | ||||||||
| F01F1.8a.2 | |||||||||
| F01F1.8b.1 | |||||||||
| Other_sequence (166) | |||||||||
| Associated_feature | WBsf655405 | ||||||||
| WBsf992556 | |||||||||
| WBsf226726 | |||||||||
| WBsf226727 | |||||||||
| WBsf226728 | |||||||||
| WBsf226729 | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr2045 | ||||||||
| Expr1011531 | |||||||||
| Expr1030207 | |||||||||
| Expr1147738 | |||||||||
| Expr2009774 | |||||||||
| Expr2028014 | |||||||||
| Drives_construct | WBCnstr00037582 | ||||||||
| Construct_product | WBCnstr00037582 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (178) | |||||||||
| Interaction (142) | |||||||||
| Map_info | Map | III | Position | -1.43903 | Error | 5.4e-05 | |||
| Positive | Positive_clone | F01F1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (21) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
