WormBase Tree Display for Gene: WBGene00000282
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| WBGene00000282 | SMap | S_parent | Sequence | R01E6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cah-4 | |||||||
| Sequence_name | R01E6.3 | ||||||||
| Molecular_name | R01E6.3a | ||||||||
| R01E6.3a.1 | |||||||||
| CE29433 | |||||||||
| R01E6.3b | |||||||||
| CE29434 | |||||||||
| R01E6.3b.1 | |||||||||
| Other_name | CELE_R01E6.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | cah-4 | ||||||||
| DB_info | Database | AceView | gene | XO161 | |||||
| WormQTL | gene | WBGene00000282 | |||||||
| WormFlux | gene | WBGene00000282 | |||||||
| NDB | locus_tag | CELE_R01E6.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000282|UniProtKB=Q21614 | |||||||
| family | PTHR18952 | ||||||||
| NCBI | gene | 181478 | |||||||
| RefSeq | protein | NM_077864.6 | |||||||
| NM_077863.9 | |||||||||
| TrEMBL | UniProtAcc | Q8WQD8 | |||||||
| Q21614 | |||||||||
| UniProt_GCRP | UniProtAcc | Q21614 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cah | ||||||||
| Allele (38) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00000279 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000280 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000281 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000283 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000284 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | cah-4 encodes a carbonic anhydrase homolog, which is rather divergent from other such homologs in C. elegans (with at most 38% identity to any other carbonic anhydrase, in or out of C. elegans); it is individually dispensable for viability and for grossly normal postembryonic morphology, and thus may have a more subtle biological function than the basic cytoprotective functions expected for carbonic anhydrases. | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables carbonate dehydratase activity. Involved in small molecule metabolic process. Predicted to be located in cytoplasm. Expressed in several structures, including body wall musculature; enteric muscle; excretory cell; rectal muscle; and somatic nervous system. Is an ortholog of several human genes including CA1 (carbonic anhydrase 1); CA3 (carbonic anhydrase 3); and CA5A (carbonic anhydrase 5A). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Modifies_disease | DOID:11723 | ||||||||
| Modifies_disease_in_annotation | WBDOannot00000425 | ||||||||
| WBDOannot00000430 | |||||||||
| WBDOannot00000431 | |||||||||
| Molecular_info | Corresponding_CDS | R01E6.3a | |||||||
| R01E6.3b | |||||||||
| Corresponding_CDS_history | R01E6.3:wp65 | ||||||||
| Corresponding_transcript | R01E6.3a.1 | ||||||||
| R01E6.3b.1 | |||||||||
| Other_sequence (37) | |||||||||
| Associated_feature | WBsf648678 | ||||||||
| WBsf716638 | |||||||||
| WBsf1007641 | |||||||||
| WBsf1024250 | |||||||||
| WBsf236581 | |||||||||
| WBsf236582 | |||||||||
| WBsf236583 | |||||||||
| WBsf236584 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000716 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027423 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077519 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098178 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017294 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026008 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110318 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077520 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026009 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051096 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8777 | ||||||||
| Expr9209 | |||||||||
| Expr9943 | |||||||||
| Expr9944 | |||||||||
| Expr15868 | |||||||||
| Expr1011544 | |||||||||
| Expr1030184 | |||||||||
| Expr1154803 | |||||||||
| Expr2009698 | |||||||||
| Expr2027937 | |||||||||
| Drives_construct | WBCnstr00013515 | ||||||||
| WBCnstr00013798 | |||||||||
| WBCnstr00014952 | |||||||||
| WBCnstr00014953 | |||||||||
| WBCnstr00015746 | |||||||||
| WBCnstr00015747 | |||||||||
| WBCnstr00015748 | |||||||||
| WBCnstr00015749 | |||||||||
| WBCnstr00037607 | |||||||||
| Construct_product | WBCnstr00015747 | ||||||||
| WBCnstr00015748 | |||||||||
| WBCnstr00015749 | |||||||||
| WBCnstr00037607 | |||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (239) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | X | Position | 12.7093 | Error | 0.004543 | |||
| Positive | Positive_clone | R01E6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Sequence connection from [Hewett-Emmett D] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
