WormBase Tree Display for Gene: WBGene00000282
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WBGene00000282 | SMap | S_parent | Sequence | R01E6 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | cah | ||||||
Allele (38) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (11) | |||||||
Ortholog (32) | |||||||
Paralog | WBGene00000279 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00000280 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00000281 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00000283 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00000284 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | cah-4 encodes a carbonic anhydrase homolog, which is rather divergent from other such homologs in C. elegans (with at most 38% identity to any other carbonic anhydrase, in or out of C. elegans); it is individually dispensable for viability and for grossly normal postembryonic morphology, and thus may have a more subtle biological function than the basic cytoprotective functions expected for carbonic anhydrases. | Curator_confirmed | WBPerson567 | |||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enables carbonate dehydratase activity. Involved in small molecule metabolic process. Predicted to be located in cytoplasm. Expressed in several structures, including body wall musculature; enteric muscle; excretory cell; rectal muscle; and somatic nervous system. Is an ortholog of several human genes including CA1 (carbonic anhydrase 1); CA3 (carbonic anhydrase 3); and CA5A (carbonic anhydrase 5A). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Modifies_disease | DOID:11723 | ||||||
Modifies_disease_in_annotation | WBDOannot00000425 | ||||||
WBDOannot00000430 | |||||||
WBDOannot00000431 | |||||||
Molecular_info | Corresponding_CDS | R01E6.3a | |||||
R01E6.3b | |||||||
Corresponding_CDS_history | R01E6.3:wp65 | ||||||
Corresponding_transcript | R01E6.3a.1 | ||||||
R01E6.3b.1 | |||||||
Other_sequence (37) | |||||||
Associated_feature | WBsf648678 | ||||||
WBsf716638 | |||||||
WBsf1007641 | |||||||
WBsf1024250 | |||||||
WBsf236581 | |||||||
WBsf236582 | |||||||
WBsf236583 | |||||||
WBsf236584 | |||||||
Experimental_info | RNAi_result | WBRNAi00000716 | Inferred_automatically | RNAi_primary | |||
WBRNAi00027423 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00077519 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00098178 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00017294 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00026008 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00110318 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00077520 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00026009 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00051096 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr8777 | ||||||
Expr9209 | |||||||
Expr9943 | |||||||
Expr9944 | |||||||
Expr15868 | |||||||
Expr1011544 | |||||||
Expr1030184 | |||||||
Expr1154803 | |||||||
Expr2009698 | |||||||
Expr2027937 | |||||||
Drives_construct | WBCnstr00013515 | ||||||
WBCnstr00013798 | |||||||
WBCnstr00014952 | |||||||
WBCnstr00014953 | |||||||
WBCnstr00015746 | |||||||
WBCnstr00015747 | |||||||
WBCnstr00015748 | |||||||
WBCnstr00015749 | |||||||
WBCnstr00037607 | |||||||
Construct_product | WBCnstr00015747 | ||||||
WBCnstr00015748 | |||||||
WBCnstr00015749 | |||||||
WBCnstr00037607 | |||||||
Microarray_results (28) | |||||||
Expression_cluster (239) | |||||||
Interaction (16) | |||||||
Map_info | Map | X | Position | 12.7093 | Error | 0.004543 | |
Positive | Positive_clone | R01E6 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference (11) | |||||||
Remark | Sequence connection from [Hewett-Emmett D] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |