Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00000253

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00000253EvidenceCGC_data_submission
SMapS_parentSequenceCHROMOSOME_I
IdentityVersion2
NameCGC_namebli-3Person_evidenceWBPerson261
Sequence_nameF56C11.1
Molecular_nameF56C11.1
F56C11.1.1
CE28463
F56C11.1.2
Other_nametag-31CGC_data_submission
duox-1Paper_evidenceWBPaper00004841
WBPaper00006395
Person_evidenceWBPerson56
CELE_F56C11.1Accession_evidenceNDBBX284601
Public_namebli-3
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
207 Sep 2009 12:21:16WBPerson9133Name_changeCGC_nameduox-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classbli
Reference_alleleWBVar00143469
Allele (139)
Legacy_informatione767 : small irregular shape variable slight blistering in adult. ES2 (adult late larvae) ME1. NA1.
See also e767, n529
[C.elegansII]e767 : small irregular shape variable slight blistering in adult. ES2 (adult late larvae) ME1. OA1: n529. [Brenner 1974; CB]
StrainWBStrain00005170
WBStrain00005171
WBStrain00005172
WBStrain00005173
WBStrain00026799
WBStrain00026835
WBStrain00027251
WBStrain00028999
WBStrain00037731
WBStrain00004204
RNASeq_FPKM (74)
GO_annotation (36)
OrthologWBGene00070507Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00027637Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00162854Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00159126Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00126923Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00114201Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00224727Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12331Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12206Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g15043Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g1901Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g1902Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6577Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP29.g11006Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10764Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g8818Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10795Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g10796Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g17497Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g17826Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g7069Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g7353Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g5320Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_I.g416Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14582Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01692.g22567Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06360Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001329Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12957Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12958Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11380Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10247800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g26Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00245165Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00262944Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00289879Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0283531Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-091117-14Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:13273Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:3062Homo sapiensFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:3036280Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:628761Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ParalogWBGene00018771Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionbli-3 encodes an NADPH oxidases of the dual oxidase (DUOX) variety that contains an N-terminal peroxidase domain, two central calmodulin-binding EF hands, and a C-terminal superoxide-generating NADPH-oxidase domain; BLI-3 is required for dityrosine cross-linking of collagen, and thus for cuticular integrity; BLI-3 is thought to use cytosolic NADPH to generate reactive oxygen, which then drives the peroxidase ectodomain to cross-link free tyrosine in collagen; BLI-3 is expressed exclusively in hypodermal cells at low levels, with peaks of expression corresponding to collagen/cuticle biosynthesis.Paper_evidenceWBPaper00000031
WBPaper00002665
WBPaper00004841
WBPaper00005747
WBPaper00033104
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated19 Aug 2009 00:00:00
Automated_descriptionEnables NAD(P)H oxidase H2O2-forming activity; heme binding activity; and peroxidase activity. Involved in several processes, including cuticle development involved in collagen and cuticulin-based cuticle molting cycle; defense response to other organism; and post-embryonic development. Located in plasma membrane. Expressed in hypodermis; intestine; and neurons. Used to study phenylketonuria. Human ortholog(s) of this gene implicated in cholera; inflammatory bowel disease (multiple); and thyroid dyshormonogenesis 6. Is an ortholog of human DUOX2 (dual oxidase 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:9281
Potential_modelDOID:0050328Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:13273)
DOID:8577Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:13273)
DOID:1498Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:13273)
DOID:8778Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:13273)
DOID:0112189Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:13273)
Models_disease_assertedWBDOannot00000626
Molecular_infoCorresponding_CDSF56C11.1
Corresponding_transcriptF56C11.1.1
F56C11.1.2
Other_sequence (17)
Associated_featureWBsf717434
WBsf982412
WBsf982413
WBsf982414
WBsf1009036
WBsf218873
WBsf218874
Experimental_infoRNAi_result (35)
Expr_patternExpr2613
Expr15757
Expr1010236
Expr1030163
Expr1152411
Expr2009629
Expr2027868
Drives_constructWBCnstr00021138
WBCnstr00037626
WBCnstr00042508
Construct_productWBCnstr00015484
WBCnstr00015485
WBCnstr00015489
WBCnstr00015491
WBCnstr00037626
AntibodyWBAntibody00000404
WBAntibody00002391
WBAntibody00002392
Microarray_results (21)
Expression_cluster (114)
Interaction (22)
WBProcessWBbiopr:00000039
WBbiopr:00000096
Map_infoMapIPosition-19.1485Error0.002825
Well_ordered
PositiveInside_rearrsDp2
Positive_cloneF56C11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point1
2504
3941
4741
6080
7166
7167
7169
Multi_point (18)
Pos_neg_data6276
1026
955
4553
4554
4555
4556
Landmark_gene
Reference (58)
RemarkGene name created from parsing 'genotype' field from CGC strain informationCGC_data_submission
MethodGene