WormBase Tree Display for Gene: WBGene00000017
expand all nodes | collapse all nodes | view schema
| WBGene00000017 | SMap | S_parent | Sequence | T22H6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | abf-6 | |||||||
| Sequence_name | T22H6.7 | ||||||||
| Molecular_name | T22H6.7 | ||||||||
| T22H6.7.1 | |||||||||
| CE30355 | |||||||||
| Other_name | CELE_T22H6.7 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | abf-6 | ||||||||
| DB_info | Database | AceView | gene | XN413 | |||||
| WormQTL | gene | WBGene00000017 | |||||||
| WormFlux | gene | WBGene00000017 | |||||||
| NDB | locus_tag | CELE_T22H6.7 | |||||||
| NCBI | gene | 181418 | |||||||
| RefSeq | protein | NM_171787.4 | |||||||
| TREEFAM | TREEFAM_ID | TF319818 | |||||||
| TrEMBL | UniProtAcc | G5EBS3 | |||||||
| UniProt_GCRP | UniProtAcc | G5EBS3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abf | ||||||||
| Allele (23) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (17) | |||||||||
| Paralog | WBGene00000014 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00000015 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00000016 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00012634 | |||||||||
| Structured_description | Concise_description | abf-6 encodes a homolog of the antibacterial factor ASABF from Ascaris suum; ABF-6 may play a role in innate immunity, though at present the only evidence for its having an antimicrobial humoral function is its sequence similarity. | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00005130 | |||||||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| WBPaper00013575 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 03 Mar 2006 00:00:00 | ||||||||
| Automated_description | Enriched in posterior arcade cell based on single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on RNA-seq and microarray studies. Is affected by twelve chemicals including rotenone; multi-walled carbon nanotube; and Cry5B based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T22H6.7 | |||||||
| Corresponding_transcript | T22H6.7.1 | ||||||||
| Other_sequence | AB086410 | ||||||||
| CSC01351_1 | |||||||||
| FD514774.1 | |||||||||
| Associated_feature | WBsf236513 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00053876 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00053872 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020526 | ||||||||
| Expr1157423 | |||||||||
| Expr2009083 | |||||||||
| Expr2027319 | |||||||||
| Drives_construct | WBCnstr00037794 | ||||||||
| Construct_product | WBCnstr00037794 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (139) | |||||||||
| Map_info | Map | X | Position | 8.44288 | |||||
| Positive | Positive_clone | T22H6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003925 | ||||||||
| WBPaper00024209 | |||||||||
| WBPaper00025180 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
