WormBase Tree Display for Gene: WBGene00000016

WBGene00000016 SMap: S_parent: Sequence: T22H6
  Identity: Version: 1
    Name: CGC_name: abf-5
      Sequence_name: T22H6.5
      Molecular_name: T22H6.5
        T22H6.5.1
        CE03700
      Other_name: CELE_T22H6.5 Accession_evidence: NDB BX284606
      Public_name: abf-5
    DB_info: Database: AceView gene XN411
        WormQTL gene WBGene00000016
        WormFlux gene WBGene00000016
        NDB locus_tag CELE_T22H6.5
        NCBI gene 188770
        RefSeq protein NM_077735.6
        TREEFAM TREEFAM_ID TF319818
        TrEMBL UniProtAcc G5EFQ2
        UniProt_GCRP UniProtAcc G5EFQ2
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:19 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: abf
    Allele (14)
    Strain: WBStrain00033038
    RNASeq_FPKM (74)
    Ortholog (17)
    Paralog: WBGene00000014 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00000015 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00000017 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00012634 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: The abf-5 gene encodes a homolog of the antibacterial factor ASABF from Ascaris suum. Paper_evidence: WBPaper00013575
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in FLP based on microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including allantoin; Sirolimus; and Psoralens based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T22H6.5
    Corresponding_transcript: T22H6.5.1
    Other_sequence: AB086409
      FD517103.1
      CRC00359_1
      CSC00683_1
    Associated_feature: WBsf663449
      WBsf236512
  Experimental_info: RNAi_result: WBRNAi00075986 Inferred_automatically: RNAi_primary
      WBRNAi00035831 Inferred_automatically: RNAi_primary
      WBRNAi00019049 Inferred_automatically: RNAi_primary
      WBRNAi00053872 Inferred_automatically: RNAi_primary
      WBRNAi00053873 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1015506
      Expr1157421
      Expr2009082
      Expr2027318
    Drives_construct: WBCnstr00037795
    Construct_product: WBCnstr00037795
    Microarray_results (19)
    Expression_cluster (174)
    Interaction: WBInteraction000319237
      WBInteraction000363368
      WBInteraction000401405
      WBInteraction000419072
  Map_info: Map: X Position: 8.43791 Error: 0.01463
    Positive: Positive_clone: T22H6 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003925
    WBPaper00013575
    WBPaper00015343
    WBPaper00024209
    WBPaper00025180
    WBPaper00031238
    WBPaper00065331
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene