WormBase Tree Display for Gene: WBGene00000016
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WBGene00000016 | SMap | S_parent | Sequence | T22H6 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | abf | ||||||
Allele (14) | |||||||
Strain | WBStrain00033038 | ||||||
RNASeq_FPKM (74) | |||||||
Ortholog (17) | |||||||
Paralog | WBGene00000014 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WormBase-Compara | |||||||
WBGene00000015 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00000017 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WBGene00012634 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | The abf-5 gene encodes a homolog of the antibacterial factor ASABF from Ascaris suum. | Paper_evidence | WBPaper00013575 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in FLP based on microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including allantoin; Sirolimus; and Psoralens based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T22H6.5 | |||||
Corresponding_transcript | T22H6.5.1 | ||||||
Other_sequence | AB086409 | ||||||
FD517103.1 | |||||||
CRC00359_1 | |||||||
CSC00683_1 | |||||||
Associated_feature | WBsf663449 | ||||||
WBsf236512 | |||||||
Experimental_info | RNAi_result | WBRNAi00075986 | Inferred_automatically | RNAi_primary | |||
WBRNAi00035831 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00019049 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053872 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053873 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1015506 | ||||||
Expr1157421 | |||||||
Expr2009082 | |||||||
Expr2027318 | |||||||
Drives_construct | WBCnstr00037795 | ||||||
Construct_product | WBCnstr00037795 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (174) | |||||||
Interaction | WBInteraction000319237 | ||||||
WBInteraction000363368 | |||||||
WBInteraction000401405 | |||||||
WBInteraction000419072 | |||||||
Map_info | Map | X | Position | 8.43791 | Error | 0.01463 | |
Positive | Positive_clone | T22H6 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00003925 | ||||||
WBPaper00013575 | |||||||
WBPaper00015343 | |||||||
WBPaper00024209 | |||||||
WBPaper00025180 | |||||||
WBPaper00031238 | |||||||
WBPaper00065331 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |