WormBase Tree Display for Gene: WBGene00000015

WBGene00000015 SMap: S_parent: Sequence: Y38H6C
  Identity: Version: 1
    Name: CGC_name: abf-4
      Sequence_name: Y38H6C.22
      Molecular_name: Y38H6C.22
        Y38H6C.22.1
        CE19116
      Other_name: CELE_Y38H6C.22 Accession_evidence: NDB BX284605
      Public_name: abf-4
    DB_info: Database: AceView gene 5V26
        WormQTL gene WBGene00000015
        WormFlux gene WBGene00000015
        NDB locus_tag CELE_Y38H6C.22
        NCBI gene 189702
        RefSeq protein NM_075564.3
        TREEFAM TREEFAM_ID TF319818
        TrEMBL UniProtAcc Q9XX40
        UniProt_GCRP UniProtAcc Q9XX40
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:19 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: abf
    Allele (36)
    RNASeq_FPKM (74)
    Ortholog (11)
    Paralog: WBGene00000014 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00000016 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00000017 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00012634 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: abf-4 encodes a homolog of the antibacterial factor ASABF from Ascaris suum; ABF-4 may play a role in innate immunity, though at present the only evidence for its having an antimicrobial humoral function is its sequence similarity. Paper_evidence: WBPaper00005130
            WBPaper00013575
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Is affected by several genes including daf-12; eat-2; and clk-1 based on microarray; tiling array; and RNA-seq studies. Is affected by six chemicals including Cadmium Chloride; bortezomib; and resveratrol based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y38H6C.22
    Corresponding_transcript: Y38H6C.22.1
  Experimental_info: RNAi_result: WBRNAi00075997 Inferred_automatically: RNAi_primary
      WBRNAi00056075 Inferred_automatically: RNAi_primary
      WBRNAi00020325 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1015303
      Expr1159597
      Expr2009081
      Expr2027317
    Drives_construct: WBCnstr00037796
    Construct_product: WBCnstr00037796
    Microarray_results (14)
    Expression_cluster (65)
    Interaction (60)
  Map_info: Map: V Position: 25.0123 Error: 0.001077
    Positive: Positive_clone: Y38H6C Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003925
    WBPaper00023115
    WBPaper00024209
    WBPaper00025180
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene