WormBase Tree Display for Pseudogene: T26F2.2
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| T26F2.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T26F2 | |||
| Structure | Source_exons | 1 | 56 | |||
| 105 | 291 | |||||
| 421 | 744 | |||||
| 989 | 1137 | |||||
| 1180 | 1404 | |||||
| DB_info | DB_remark | coding pseudogene | ||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Type | Coding_pseudogene | |||||
| Attributes | SubType | unprocessed_pseudogene | ||||
| Visible | Gene | WBGene00012058 | ||||
| Brief_identification | Pseudogene containing a RAI1 like PD-(D/E)XK nuclease domain | Curator_confirmed | WBPerson1983 | |||
| Corresponding_PCR_product | mv_T26F2.2 | |||||
| sjj2_T26F2.2 | ||||||
| Corresponding_oligo_set (13) | ||||||
| Variation (30) | ||||||
| Microarray_results (13) | ||||||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 22 Mar 2012 00:00:00 | WBPerson4025 | ||||
| Remark | [070426 gw3] Split T26F2.2 into T26F2.2 and T26F2.3 based no EST data | Accession_evidence | NDB | AU114683 | ||
| EB994142 | ||||||
| Curator_confirmed | WBPerson4025 | |||||
| [080131 gw3] It is possible that this is a pseudogene because there is evidence of a frameshift at the start of the third exon. | Curator_confirmed | WBPerson4025 | ||||
| [100524 gw3] Added a new exon in the second intron based on RNASeq data which makes this region look more like a new exon and an intron rather than a frameshift, but it is still not totally unambiguous. | From_analysis | RNASeq_Hillier_elegans | ||||
| [120322 gw3] Converted thi9s to a pseudogene because there is no RNASeq evidence for the old third intron so it has internal STOP codons. | From_analysis | RNASeq_Hillier_elegans | ||||
| Method | Pseudogene |
