WormBase Tree Display for Pseudogene: T26F2.2
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T26F2.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | T26F2 | |||
Structure | Source_exons | 1 | 56 | |||
105 | 291 | |||||
421 | 744 | |||||
989 | 1137 | |||||
1180 | 1404 | |||||
DB_info | DB_remark | coding pseudogene | ||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Type | Coding_pseudogene | |||||
Attributes | SubType | unprocessed_pseudogene | ||||
Visible | Gene | WBGene00012058 | ||||
Brief_identification | Pseudogene containing a RAI1 like PD-(D/E)XK nuclease domain | Curator_confirmed | WBPerson1983 | |||
Corresponding_PCR_product | mv_T26F2.2 | |||||
sjj2_T26F2.2 | ||||||
Corresponding_oligo_set | 173154_s_at | |||||
A_12_P141032 | ||||||
GPL13394_WBGene00012058 | ||||||
GPL13914_T26F2.2 | ||||||
GPL14144_T26F2.2_299-358_0.930_10_A | ||||||
GPL14144_T26F2.2_454-513_0.813_50_B | ||||||
GPL14144_T26F2.2_518-577_0.749_64_C | ||||||
GPL19516_CGZ0036950 | ||||||
GPL21109_T26F2.2 | ||||||
GPL3518_CE14203 | ||||||
GPL8673_T26F2_2P00111 | ||||||
GPL9450_T26F2.2 | ||||||
cea2.p.125924 | ||||||
Variation (30) | ||||||
Microarray_results (13) | ||||||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 22 Mar 2012 00:00:00 | WBPerson4025 | ||||
Remark | [070426 gw3] Split T26F2.2 into T26F2.2 and T26F2.3 based no EST data | Accession_evidence | NDB | AU114683 | ||
EB994142 | ||||||
Curator_confirmed | WBPerson4025 | |||||
[080131 gw3] It is possible that this is a pseudogene because there is evidence of a frameshift at the start of the third exon. | Curator_confirmed | WBPerson4025 | ||||
[100524 gw3] Added a new exon in the second intron based on RNASeq data which makes this region look more like a new exon and an intron rather than a frameshift, but it is still not totally unambiguous. | From_analysis | RNASeq_Hillier_elegans | ||||
[120322 gw3] Converted thi9s to a pseudogene because there is no RNASeq evidence for the old third intron so it has internal STOP codons. | From_analysis | RNASeq_Hillier_elegans | ||||
Method | Pseudogene |