WormBase Tree Display for CDS: C41C4.5e
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C41C4.5e | SMap | S_parent | Sequence | C41C4 | ||
---|---|---|---|---|---|---|
Structure | Source_exons (14) | |||||
DB_info | Database | TrEMBL | UniProtAcc | H2FLF9 | ||
UniProt | UniProtAcc | H2FLF9 | ||||
AlphaFold | entry | H2FLF9 | ||||
Protein_id | CHROMOSOME_II | CCF23433 | 2 | |||
DB_remark | UNC-105 protein; contains similarity to Pfam domain PF00858 (Amiloride-sensitive sodium channel); contains similarity to Interpro domains IPR001873 (Epithelial sodium channel), IPR004726 (Degenerin) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | From_analysis | RNASeq_Hillier_elegans | ||||
Visible | Gene | WBGene00006832 | ||||
Corresponding_transcript | C41C4.5e.1 | |||||
Corresponding_protein | CE53921 | |||||
Corresponding_PCR_product | cenix:173-d12 | |||||
cenix:203-d4 | ||||||
mv_C41C4.4 | ||||||
mv_C41C4.5 | ||||||
sjj_C41C4.5 | ||||||
Corresponding_oligo_set (24) | ||||||
Matching_cDNA | adult_Nanopore_Roach_104974 | |||||
L2_Nanopore_Roach_98532 | ||||||
L2_Nanopore_Roach_39056 | ||||||
L1_Nanopore_Roach_69691 | ||||||
adult_Nanopore_Roach_99460 | Inferred_automatically | transcript_builder.pl | ||||
RNAi_result | WBRNAi00029717 | |||||
WBRNAi00011833 | ||||||
WBRNAi00042279 | ||||||
WBRNAi00090191 | ||||||
WBRNAi00109150 | ||||||
WBRNAi00089804 | ||||||
WBRNAi00042278 | ||||||
WBRNAi00090032 | ||||||
WBRNAi00090350 | ||||||
Microarray_results (28) | ||||||
Brief_identification | Degenerin-like protein unc-105 | Accession_evidence | UniProt | TR:H2FLF9 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 16 Oct 2019 15:03:57 | WBPerson4025 | ||||
Remark | [111205 pad] Gene model created based on RNASeq and Mass spec peptide data supplying evidence that the former 2 genes should be merged. This locus appears to have a 5' Transcript population with and internal 3' UTR and a 3' Transcript population where the 5' end can be optionally clipped/spliced off when using trans-splicing or novel exons. As well as these on-overlapping populations there is also evidence for full length transcripts that join the transcript populations together. This scenario is becoming more and more common in the C. elegans gene set. | Curator_confirmed | WBPerson1983 | |||
From_analysis | RNASeg_Hillier_elegans | |||||
Mass_spec_evidence | MSP:MCVCVCVSEETPRPIESNQITK | |||||
[191016 gw3] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4025 | ||||
From_analysis | RNASeq | |||||
Method | curated |