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WormBase Tree Display for Gene: WBGene00213870

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Name Class

WBGene00213870SMapS_parentSequenceCjap.Contig17533
IdentityVersion2
NameCGC_nameCjp-ego-1From_analysisInferred_from_orthology
Sequence_nameCJA38023
Molecular_nameCJA38023
CJA38023.1
JA49690
Public_nameCjp-ego-1
SpeciesCaenorhabditis japonica
HistoryVersion_change128 Jul 2011 11:15:56WBPerson4055EventImportedAugustus import
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCjp-ego-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classego
RNASeq_FPKMWBls:00000049.02164From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000271.29517From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000386.19235From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
6.84294From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
7.49353From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.4285From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
11.0089From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
11.657From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
16.1859From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
26.1875From_analysisRNASeq.japonica.WBls:0000041.control_mean
27.1287From_analysisRNASeq.japonica.WBls:0000041.control_median
38.0716From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
38.8031From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
39.4254From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
43.9199From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
WBls:000010111.0089From_analysisRNASeq.japonica.total_over_all_stages.control_median
17.9618From_analysisRNASeq.japonica.total_over_all_stages.control_mean
GO_annotation00235310
OrthologWBGene00001214Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00023729Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00065445Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00077398Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00151357Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00191579Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00223866Brugia malayiFrom_analysisWormBase-Compara
WBGene00225320Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9489Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6553Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g16520Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8679Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g10884Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g14889Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g17362Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g23277Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g24717Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g7253Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g13270Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g19575Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g25748Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16535Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g20553Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00825.g14404Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00825.g14405Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g6540Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15176Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02042.g24557Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_07314Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_13152Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000022Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_008968Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_008972Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06449Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14241Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g14842Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g17308Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g18634Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19319Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19320Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g37Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g9251Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10108100Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00098113Pristionchus pacificusFrom_analysisWormBase-Compara
chrI_pilon.g1429Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00244037Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00248856Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00271994Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00274061Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00283817Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00257571Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00260457Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00261824Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285572Trichuris murisFrom_analysisWormBase-Compara
WBGene00297864Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00120394Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00121308Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00138302Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable RNA-dependent RNA polymerase activity. Is an ortholog of C. elegans ego-1. In C. elegans, ego-1 is involved in gamete generation; nuclear pore localization; and regulatory ncRNA-mediated post-transcriptional gene silencing.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA38023
Corresponding_transcriptCJA38023.1
Other_sequenceJI475608.1
CR02997
Tcol_isotig16199
CJC01944_1
CRC03523_1
CRC11778_1
CJC10538_1
CBC10558_1
JI470341.1
CR03355
CR08200
JI179064.1
CRC05879_1
Oden_isotig24422
MethodGene