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WormBase Tree Display for Gene: WBGene00023729

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Name Class

WBGene00023729SMapS_parentSequencecb25.fpc0006b
IdentityVersion2
NameCGC_nameCbr-ego-1From_analysisInferred_from_orthology
Sequence_nameCBG00321
Molecular_nameCBG00321
CBG00321.1
CBP37945
Other_nameCBG_00321Accession_evidenceNDBHE600925
Public_nameCbr-ego-1
DB_infoDatabaseNDBlocus_tagCBG_00321
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:53WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-ego-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classego
AlleleWBVar00061338
WBVar00141120
WBVar00008864
WBVar00061343
WBVar00141121
WBVar00061348
WBVar00037234
RNASeq_FPKMWBls:000000211.6569From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.7877From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
16.2102From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
3.97275From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
12.4242From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.7261From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
14.7569From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000316.5016From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
21.2293From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
25.957From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
22.6241From_analysisRNASeq.briggsae.WBls:0000003.control_mean
25.4136From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000046.72042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
6.86036From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
7.0003From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
6.93195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
7.1166From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
7.1457From_analysisRNASeq.briggsae.WBls:0000004.control_mean
7.95921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.679521From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.655From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.06214From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.22335From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.91545From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.14275From_analysisRNASeq.briggsae.WBls:0000027.control_median
2.6968From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000353.37106From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.0792From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
4.15186From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.55042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
6.84733From_analysisRNASeq.briggsae.WBls:0000038.control_median
7.14424From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
7.23143From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:000004119.8486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
31.4991From_analysisRNASeq.briggsae.WBls:0000041.control_mean
34.5171From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
35.0729From_analysisRNASeq.briggsae.WBls:0000041.control_median
35.6287From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
36.0019From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
17.3572From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
19.3415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
27.1158From_analysisRNASeq.briggsae.WBls:0000041.control_mean
27.1828From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006326.0999From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
26.362From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
27.3062From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
28.3804From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
28.4719From_analysisRNASeq.briggsae.WBls:0000063.control_mean
34.2108From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
21.6753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
26.8341From_analysisRNASeq.briggsae.WBls:0000063.control_median
27.3391From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010113.8923From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.14424From_analysisRNASeq.briggsae.total_over_all_stages.control_median
13.8446From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
9.51921From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00127079
Ortholog (57)
ParalogWBGene00038666Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00024074Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026758Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable RNA-dependent RNA polymerase activity. Is an ortholog of C. elegans ego-1. In C. elegans, ego-1 is involved in gamete generation; nuclear pore localization; and regulatory ncRNA-mediated post-transcriptional gene silencing.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG00321
Corresponding_transcriptCBG00321.1
Other_sequence (18)
Experimental_infoExpr_patternExpr1069389
Microarray_resultsGPL8303_CB6_WBGene00023729_A
GPL8303_CB6_WBGene00023729_B
GPL14143_CBG00321_3902-3961_0.868_26_C
GPL14143_CBG00321_4817-4876_0.847_43_B
GPL14143_CBG00321_4855-4914_0.961_1_A
Expression_clusterWBPaper00059178:Cbr-htz-1(gu167)_upregulated
WBPaper00059178:Cbr-spr-4(gu163)_upregulated
ReferenceWBPaper00064767
MethodGene