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WormBase Tree Display for Gene: WBGene00024074

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Name Class

WBGene00024074SMapS_parentSequencecb25.fpc0011c
IdentityVersion2
NameCGC_nameCbr-rrf-3From_analysisInferred_from_orthology
Sequence_nameCBG00730
Molecular_nameCBG00730
CBG00730.1
CBP49604
Other_nameCBG_00730Accession_evidenceNDBHE600999
Public_nameCbr-rrf-3
DB_infoDatabaseNDBlocus_tagCBG_00730
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:53WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-rrf-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrrf
RNASeq_FPKMWBls:00000022.83476From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
4.66643From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.45905From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
5.70549From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
5.01675From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.58227From_analysisRNASeq.briggsae.WBls:0000002.control_median
6.06769From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000039.48145From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
9.52141From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
9.56137From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
10.3365From_analysisRNASeq.briggsae.WBls:0000003.control_mean
11.9667From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000043.88426From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
3.98717From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
4.09009From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
4.24398From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
4.28528From_analysisRNASeq.briggsae.WBls:0000004.control_mean
4.3367From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
4.87138From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.23772From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.15809From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.39562From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.79104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.52584From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.53729From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.9165From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000352.20064From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000382.01476From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
2.14164From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
3.02769From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.29116From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.91375From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.09448From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004113.7474From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
13.8348From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
15.142From_analysisRNASeq.briggsae.WBls:0000041.control_median
15.3632From_analysisRNASeq.briggsae.WBls:0000041.control_mean
16.4493From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
17.4214From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
14.9499From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
15.6996From_analysisRNASeq.briggsae.WBls:0000041.control_median
15.7428From_analysisRNASeq.briggsae.WBls:0000041.control_mean
18.0538From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000635.37481From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
5.58883From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
6.1137From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
6.45157From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
6.51445From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.04335From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
5.52363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
5.85126From_analysisRNASeq.briggsae.WBls:0000063.control_median
6.34932From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001014.09009From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.66499From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
4.98293From_analysisRNASeq.briggsae.total_over_all_stages.control_median
6.21618From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00127424
Ortholog (31)
ParalogWBGene00023729Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026758Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038666Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable RNA-dependent RNA polymerase activity. Is an ortholog of C. elegans rrf-3. In C. elegans, rrf-3 is involved in regulatory ncRNA-mediated heterochromatin formation and spermatogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG00730
Corresponding_CDS_historyCBG00730:bp266
Corresponding_transcriptCBG00730.1
Other_sequenceJI181815.1
Acan_isotig16813
CBC02376_1
AE03845
JI164335.1
AYC02866_1
HQ611979.1
Experimental_infoExpr_patternExpr1060884
Microarray_resultsGPL8303_CB6_WBGene00024074_A
GPL14143_CBG00730_346-405_0.810_2_B
GPL14143_CBG00730_713-772_0.810_1_A
GPL14143_CBG00730_3764-3823_0.796_24_C
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene