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WormBase Tree Display for Gene: WBGene00192195

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Name Class

WBGene00192195SMapS_parentSequenceCbre_Contig318
IdentityVersion2
NameCGC_nameCbn-itr-1.2From_analysisInferred_from_orthology
Sequence_nameCBN30230
Molecular_nameCBN30230
CBN30230.1
CN37863
Public_nameCbn-itr-1.2
SpeciesCaenorhabditis brenneri
HistoryVersion_change120 May 2009 11:55:53WBPerson1847EventCreated
220 Mar 2018 10:26:13WBPerson4025Name_changeCGC_nameCbn-itr-1.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classitr
RNASeq_FPKMWBls:00000021.92844From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
2.06567From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
2.08449From_analysisRNASeq.brenneri.WBls:0000002.control_mean
2.27407From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
2.27465From_analysisRNASeq.brenneri.WBls:0000002.control_median
2.27522From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
2.65682From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
2.72463From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
3.29732From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
3.62274From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
WBls:00000040.199208From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0.398417From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
3.62539From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
4.13487From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
4.27234From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
5.75448From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
6.17141From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:00000384.48048From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
4.53872From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
4.59696From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:00000410From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
2.14886From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
3.18974From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
3.28433From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
3.53979From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
3.62264From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
3.65003From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
3.66775From_analysisRNASeq.brenneri.WBls:0000041.control_median
3.68547From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
3.78889From_analysisRNASeq.brenneri.WBls:0000041.control_mean
3.82448From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
3.91272From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
4.19796From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
4.8914From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
5.91829From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
7.02131From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
7.73525From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
WBls:00001012.93365From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
3.28433From_analysisRNASeq.brenneri.total_over_all_stages.control_median
GO_annotation00227989
00227990
00227991
00227992
00227993
00227994
00227995
00227996
00227997
00227998
OrthologWBGene00002173Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00028294Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00074864Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00130571Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g11401Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3420Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g16161Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g17261Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6300Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g915Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16163Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g837Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g16786Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g17340Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g5399Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g7890Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1395Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00211.g7110Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00623.g12902Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_03927.g18484Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_10274.g22555Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13775.g24375Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-itr-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g7968Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g7969Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00007.g529Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_12881Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013996Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02938Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g15545Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40306000Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40306300Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00062475Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00115426Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00224049Brugia malayiFrom_analysisWormBase-Compara
chrIV_pilon.g10889Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241277Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00267095Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00286523Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00191347Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00163093Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00193580Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00193883Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00193891Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable inositol 1,4,5 trisphosphate binding activity and inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity. Predicted to be involved in calcium ion transmembrane transport. Predicted to be located in endoplasmic reticulum and membrane. Is an ortholog of C. elegans itr-1. In C. elegans, itr-1 is involved in several processes, including determination of adult lifespan; multicellular organism reproduction; and system process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN30230
Corresponding_CDS_historyCBN30230:np221
Corresponding_transcriptCBN30230.1
Other_sequenceCBC00675_1
CBC06754_1
ACC12319_1
Tcir_isotig08870
FC540678.1
Acan_isotig20590
Tcol_isotig01451
EY461626.1
FC811894.1
Dviv_isotig27495
Oden_isotig24914
Hbac_isotig04893
ACC25850_1
FC555123.1
Tcol_isotig01450
Oden_isotig17493
FC540632.1
SRC01589_1
FC539266.1
EX537648.1
MH05707
MHC02162_1
JI478584.1
Acan_isotig08817
FC817481.1
EX546896.1
MethodGene