WormBase Tree Display for Gene: WBGene00115426
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| WBGene00115426 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | CGC_name | Ppa-itr-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA25872 | ||||||||
| Molecular_name | PPA25872 | ||||||||
| PPA25872.1 | |||||||||
| PP69055 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000082724 | ||||||||
| GENEPREDICTION_SNAP300000082726 | |||||||||
| UMM-S2854-2.33 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-itr-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:51 | WBPerson4055 | Event | Acquires_merge | WBGene00115428 | ||||
| 3 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-itr-1 | ||||
| 4 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-itr-1 | ||||
| 6 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 7 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-itr-1 | ||||
| Acquires_merge | WBGene00115428 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | itr | ||||||||
| RNASeq_FPKM | WBls:0000032 | 7.01701 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.82863 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 2.61521 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00185009 | ||||||||
| 00185010 | |||||||||
| 00185011 | |||||||||
| 00185012 | |||||||||
| 00185013 | |||||||||
| 00185014 | |||||||||
| 00185015 | |||||||||
| 00185016 | |||||||||
| 00185017 | |||||||||
| 00185018 | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00276305 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to enable inositol 1,4,5 trisphosphate binding activity and inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity. Predicted to be involved in calcium ion transmembrane transport. Predicted to be located in endoplasmic reticulum and membrane. Is an ortholog of C. elegans itr-1. In C. elegans, itr-1 is involved in several processes, including determination of adult lifespan; multicellular organism reproduction; and system process. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA25872 | |||||||
| Corresponding_transcript | PPA25872.1 | ||||||||
| Other_sequence (47) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_8374 | |||||||
| GPL14372_Probes_8375 | |||||||||
| GPL14372_Probes_8376 | |||||||||
| GPL14372_Probes_8378 | |||||||||
| GPL14372_Probes_8379 | |||||||||
| GPL14372_Probes_8380 | |||||||||
| GPL14372_Probes_8381 | |||||||||
| GPL14372_Probes_8382 | |||||||||
| GPL14372_Probes_52958 | |||||||||
| GPL14372_Probes_52964 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_down | ||||||||
| Remark | [190208 pad] The CGC name Ppa-itr-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-itr-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
