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WormBase Tree Display for Gene: WBGene00160417

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Name Class

WBGene00160417SMapS_parentSequenceCbre_Contig18
IdentityVersion2
NameCGC_nameCbn-unc-40.1From_analysisInferred_from_orthology
Sequence_nameCBN21692
Molecular_nameCBN21692
CBN21692.1
CN27112
Public_nameCbn-unc-40.1
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:52WBPerson4055EventImportedfrom NGASP
220 Mar 2018 10:26:13WBPerson4025Name_changeCGC_nameCbn-unc-40.1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
3.25033From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
3.5214From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
3.57825From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
3.57934From_analysisRNASeq.brenneri.WBls:0000002.control_mean
3.70925From_analysisRNASeq.brenneri.WBls:0000002.control_median
3.84026From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
4.91655From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
4.99282From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
5.71626From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
5.9775From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
WBls:000000413.537From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
27.0739From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:000002412.1087From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
12.3167From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
12.4337From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
12.4814From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
8.29024From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
WBls:00000385.49135From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
5.9542From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
6.41704From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:000004112.8043From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
16.4416From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
2.2295From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
2.63075From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
2.94066From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
3.51157From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
3.60995From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
3.85998From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
4.76118From_analysisRNASeq.brenneri.WBls:0000041.control_median
5.50748From_analysisRNASeq.brenneri.WBls:0000041.control_mean
5.66238From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
6.05631From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
6.06078From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
7.09983From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
7.34086From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
7.87115From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
WBls:00001013.85998From_analysisRNASeq.brenneri.total_over_all_stages.control_median
5.25469From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
OrthologWBGene00006776Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00035291Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00060358Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00126223Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
CBOVI.g10693Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6080Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6416Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9390Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g9393Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17082Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7666Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1487Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g18061Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9327Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g23251Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00095.g4203Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00095.g4204Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13295.g24171Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-40Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15165Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00491.g12060Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06376Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001309Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06699Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g17054Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10282300Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00113211Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00226094Brugia malayiFrom_analysisWormBase-Compara
chrI_pilon.g978Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00210117Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00238359Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00262661Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00297116Trichuris murisFrom_analysisWormBase-Compara
WBGene00301123Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00162859Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00139045Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00139667Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00140626Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00145498Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00147246Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00148438Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00148619Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00149098Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00150685Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00152746Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00155675Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00157143Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00157385Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00158135Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00158146Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00160853Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00161334Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00163245Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00163557Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00164045Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00190198Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00190316Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00190968Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00191796Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00192059Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00192229Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00193615Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00164421Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Fibronectin type III superfamily; Immunoglobulin I-set domain; Immunoglobulin I-set; Fibronectin type III; Immunoglobulin-like fold; Immunoglobulin subtype 2; Immunoglobulin domain; Immunoglobulin-like domain superfamily; Fibronectin type III domain; and Immunoglobulin subtype. Is an ortholog of C. elegans unc-40. In C. elegans, unc-40 is involved in several processes, including axon guidance; regulation of locomotion; and sex differentiation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN21692
Corresponding_CDS_historyCBN21692:np197
Corresponding_transcriptCBN21692.1
Other_sequenceOden_isotig09046
Dviv_isotig07003
Oden_isotig09047
Dviv_isotig07005
ACC32859_1
Dviv_isotig07006
JI472611.1
Dviv_isotig07004
Oden_isotig09048
Oden_isotig09049
FC554101.1
Acan_isotig08978
CR00445
Dviv_isotig07002
XI03356
Tcir_isotig14780
Experimental_infoMicroarray_resultsGPL14142_CBN21692_2635-2694_0.827_36_B
GPL14142_CBN21692_2913-2972_0.818_43_A
GPL14142_CBN21692_3948-4007_0.782_120_C
MethodGene