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WormBase Tree Display for Gene: WBGene00154222

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Name Class

WBGene00154222SMapS_parentSequenceCbre_Contig78
IdentityVersion2
NameCGC_nameCbn-prg-1From_analysisInferred_from_orthology
Sequence_nameCBN15497
Molecular_nameCBN15497
CBN15497.1
CN21733
Public_nameCbn-prg-1
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:51WBPerson4055EventImportedfrom NGASP
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbn-prg-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classprg
RNASeq_FPKMWBls:0000002101.493From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
105.356From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
141.076From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
51.3274From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
58.256From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
68.4671From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
70.3073From_analysisRNASeq.brenneri.WBls:0000002.control_mean
75.3752From_analysisRNASeq.brenneri.WBls:0000002.control_median
82.2833From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
94.8139From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
47.3406From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
94.6813From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
3.10136From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
3.73891From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
3.79795From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
4.48237From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
5.04231From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
WBls:0000038106.857From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
107.182From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
107.507From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041100.445From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
103.27From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
106.127From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
143.04From_analysisRNASeq.brenneri.WBls:0000041.control_mean
165.641From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
171.14From_analysisRNASeq.brenneri.WBls:0000041.control_median
176.639From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
183.664From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
195.729From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
202.099From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
204.615From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
211.678From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
216.938From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
236.483From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
91.4565From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
93.8573From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
WBls:0000101101.493From_analysisRNASeq.brenneri.total_over_all_stages.control_median
106.476From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00214710
00214711
OrthologWBGene00004178Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00004179Caenorhabditis elegansFrom_analysisOMA
TreeFam
WBGene00032975Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00064270Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00066619Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00070957Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00113193Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00124776Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g10186Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g15904Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4737Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g9290Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8606Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g10815Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g17151Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g4678Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g11549Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g22073Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1652Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g5922Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g6792Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00048.g2550Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_08871.g21750Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_09051.g21854Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_15928.g25210Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_16198.g25298Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_17075.g25583Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_28602.g27664Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_I.g1824Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold591.g5111Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g21009Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00873.g16331Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_07012Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_12312Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_14129Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000087Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_000974Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_002680Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_008895Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14787Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_10098600Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00082212Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrIV_pilon.g10637Caenorhabditis elegansFrom_analysisWormBase-Compara
chrI_pilon.g1418Caenorhabditis elegansFrom_analysisWormBase-Compara
ParalogWBGene00161465Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity. Is an ortholog of C. elegans prg-1. In C. elegans, prg-1 is involved in 21U-RNA metabolic process; gamete generation; and positive regulation of mitotic nuclear division.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN15497
Corresponding_transcriptCBN15497.1
Other_sequenceCBC04138_1
Oden_isotig29711
CR11560
FG978813.1
CJC16530_1
ACC06075_1
EX554611.1
Oden_isotig20338
PP01119
PPC19842_1
Tcir_isotig20817
HBC11469_1
EX536489.1
Acan_isotig14204
Hbac_isotig05203
PPC01069_1
MethodGene