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WormBase Tree Display for Gene: WBGene00141004

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Name Class

WBGene00141004SMapS_parentSequenceCbre_Contig9
IdentityVersion2
NameCGC_nameCbn-haly-1From_analysisInferred_from_orthology
Sequence_nameCBN02279
Molecular_nameCBN02279
CBN02279.1
CN14251
Public_nameCbn-haly-1
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:50WBPerson4055EventImportedfrom NGASP
212 Apr 2011 11:53:07WBPerson2970Name_changeCGC_nameCbn-haly-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhaly
RNASeq_FPKMWBls:000000210.3719From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
11.2747From_analysisRNASeq.brenneri.WBls:0000002.control_median
12.1775From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
12.8182From_analysisRNASeq.brenneri.WBls:0000002.control_mean
13.7363From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
17.458From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
20.6561From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
35.1722From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
8.85803From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
9.75172From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
WBls:00000041.39409From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
2.78819From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:000002415.7958From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
21.3746From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
27.7779From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
28.665From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
33.9936From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:000003824.8974From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
25.5606From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
26.2239From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:000004112.0613From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
12.2956From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
12.3402From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
12.4011From_analysisRNASeq.brenneri.WBls:0000041.control_median
12.4621From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
13.0864From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
13.1782From_analysisRNASeq.brenneri.WBls:0000041.control_mean
13.9992From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
15.1006From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
16.6832From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
18.5324From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
26.1219From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
32.6011From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
7.66916From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
8.79614From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
9.10252From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
WBls:000010112.2956From_analysisRNASeq.brenneri.total_over_all_stages.control_median
12.6756From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00203942
00203943
00203944
00203945
OrthologWBGene00009813Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00037154Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00058394Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00134553Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g2995Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10852Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g14393Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14422Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15939Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25221Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2109Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13776Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g2751Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g19923Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_03926.g18483Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-haly-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g13827Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00025.g1490Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01239Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023663Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02636Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5699Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0078000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g19967Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00282174Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00265194Strongyloides rattiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable histidine ammonia-lyase activity. Predicted to be involved in histidine catabolic process. Predicted to be located in cytoplasm. Is an ortholog of C. elegans haly-1. In C. elegans, haly-1 is involved in histidine catabolic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN02279
Corresponding_transcriptCBN02279.1
Other_sequenceCBC02305_1
CBC02650_1
ACC07520_2
EY466142.1
FC545727.1
EX548375.1
Tcol_isotig08597
JO468853.1
EX540054.1
FC543656.1
PTC00961_1
Dviv_isotig14886
SRC03121_1
FC542189.1
EX551231.1
EY470877.1
EY471097.1
EY471600.1
EX014236.1
HGC12030_1
EX565404.1
EX554984.1
ACC28409_1
HBC09534_1
EY458159.1
EX913261.1
Acan_isotig02407
CR07568
EY472009.1
EY467750.1
EY470398.1
EY462049.1
JI167772.1
CJC03221_1
Oden_isotig05930
CRC05094_1
MHC00341_1
Name_isotig00162
EY465596.1
FC540167.1
CR07729
SR02617
FC543591.1
EX540759.1
EX544960.1
FC545966.1
MH00197
EX559629.1
FC548845.1
Tcol_isotig08598
EX546639.1
Acan_isotig12730
EX547405.1
EY465182.1
FC547762.1
EX537198.1
Name_isotig00161
HG05114
ACC07520_1
FC541446.1
Dviv_isotig14887
EX540247.1
FC544745.1
Acan_isotig02406
EX542922.1
FC542752.1
PT02430
EX559929.1
FC540535.1
EY473282.1
Oden_isotig05929
FC554116.1
ES672549.1
EX540550.1
PT01494
FC547197.1
Experimental_infoMicroarray_resultsGPL14142_CBN02279_1712-1771_0.887_25_B
GPL14142_CBN02279_1804-1863_0.921_8_A
GPL14142_CBN02279_1880-1939_0.949_1_C
MethodGene